View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16815_low_14 (Length: 535)
Name: NF16815_low_14
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16815_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 451; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 12 - 519
Target Start/End: Complemental strand, 5332194 - 5331686
Alignment:
| Q |
12 |
acagaccatccaattgaaccatattgcatttggaactcataactgtaaacaagttctttttatcaaaatatgctacaaaaacaataacttaacaaggttt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5332194 |
acagaccatccaattgaaccatattgcatttggaactcataactgtaaacaagttctttttatcaaaatatgctacaaaaacaataacttaacaaggttt |
5332095 |
T |
|
| Q |
112 |
tgaagaagnnnnnnnntgtgatcgcgacttgtggttaaaaatcaaagtttttgatgcatatgtgaccttaatgcaaccgtgattaagggtcgcataatcg |
211 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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|
| T |
5332094 |
tgaagaagaaaaaaaatgtgatcgcgacttgtggtgaaaaatcaaagtttttgatgcatatgtgaccttaatgcaaccgtgattaagg-tcacataatcg |
5331996 |
T |
|
| Q |
212 |
gtcagctggttttaactaccattctctggaatgtcaaagattggaatataaacatgatttaaaattttgatgaccaataccaaaaatcaaatttaataag |
311 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5331995 |
gtcagctggttttaactacaattctctggaatgtcaaagattggaatataaacatgatttaaaattttgatgaccaataccaaaaatcaaatttaataag |
5331896 |
T |
|
| Q |
312 |
ctacta--cttacccgcatccttttggcaatttcagcttttggcagttaaaccatgagtcccctgtctcggcaataacagcagtttcactcgacaacata |
409 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5331895 |
ctactatacttacccgcatccttttggcaatttcagcttttggcagttaaaccatgagtcccctgtctcggcaataacagcagtttcactcgacaacata |
5331796 |
T |
|
| Q |
410 |
ttctgaatatgttgaaaaagaacattaaccctcaaaggctctctaggttcagatttaaccggcaaaccttcaggaacaaaaatcctgaaataattctcat |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5331795 |
ttctgaatatgttgaaaaagaacattaaccctcaaaggctctctaggttcagatttcaccggcaaaccttcaggaacaaaaatcctgaaataattctcat |
5331696 |
T |
|
| Q |
510 |
aagcagtatt |
519 |
Q |
| |
|
|||||||||| |
|
|
| T |
5331695 |
aagcagtatt |
5331686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 5334218 - 5334170
Alignment:
| Q |
12 |
acagaccatccaattgaaccatattgcatttggaactcataactgtaaa |
60 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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|
| T |
5334218 |
acagaccatccaattgatccatattgcatctggaactcataactgtaaa |
5334170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 331 - 441
Target Start/End: Complemental strand, 5334470 - 5334364
Alignment:
| Q |
331 |
ttttggcaatttcagcttttggcagttaaaccatgagtcccctgtctcggcaataacagcagtttcactcgacaacatattctgaatatgttgaaaaaga |
430 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||| |||| | ||||| |||||| || || | ||||||||||| ||||||||||| |||||| |
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|
| T |
5334470 |
ttttgacaatttcagcttttggcagttaaaccaagaggg---tgtcaccgcaatgacagcaatt-cattggacaacatattttgaatatgttgtaaaaga |
5334375 |
T |
|
| Q |
431 |
acattaaccct |
441 |
Q |
| |
|
||||||||||| |
|
|
| T |
5334374 |
acattaaccct |
5334364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 223 - 519
Target Start/End: Complemental strand, 20435885 - 20435589
Alignment:
| Q |
223 |
ttaactaccattctctggaatgtcaaagattggaatataaacatgatttaaaattttgatgaccaataccaaaaatcaaatttaataagctactacttac |
322 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20435885 |
ttaactacaattctctggaatgtcaaagattggaatataaacatgatttaaaattttgatgaccaataccaaaaatcaaatttaataagctactacttac |
20435786 |
T |
|
| Q |
323 |
ccgcatccttttggcaatttcagcttttggcagttaaaccatgagtcccctgtctcggcaataacagcagtttcactcgacaacatattctgaatatgtt |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20435785 |
ccgcatccttttggcaatttcagcttttggcagttaaaccatgagtcccctgtctcggcaataacagcagtttcactcgacaacatattctgaatatgtt |
20435686 |
T |
|
| Q |
423 |
gaaaaagaacattaaccctcaaaggctctctaggttcagatttaaccggcaaaccttcaggaacaaaaatcctgaaataattctcataagcagtatt |
519 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20435685 |
gaaaaagaacattaaccctcaaaggctctctaggttcagatttcaccggcaaaccttcaggaacaaaaatcctgaaataattctcataagcagtatt |
20435589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 12 - 519
Target Start/End: Complemental strand, 20438598 - 20438093
Alignment:
| Q |
12 |
acagaccatccaattgaaccatattgcatttggaactcataactgtaaacaagttctttttatcaaaatatgctacaaaaacaataacttaacaaggttt |
111 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||||||| |||| |||||| | |||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
20438598 |
acagaccatccaattgatccatattgcatctggaactcataactgtaaaaaagtactttttgttaaaatatgctacaaaaactataacataacaaggttt |
20438499 |
T |
|
| Q |
112 |
tgaa--gaagnnnnnnnntgtgatcgcgacttgtggtt---aaaaatcaaagtttttgatgcatatgtgaccttaatgcaaccgtgattaagggtcgcat |
206 |
Q |
| |
|
|||| ||| ||||||||| || | | ||||||||||||||||||||| |||||||||| ||||||| | |||||||| || ||| |
|
|
| T |
20438498 |
tgaaaggaaaaataaaaaattgatcgcgatttattgaagggaaaaatcaaagtttttgatgcctatgtgacctcgatgcaactgcgattaagg-tcacat |
20438400 |
T |
|
| Q |
207 |
aatcggtcagctggttttaactaccattctctggaatgtcaaagattggaatataaacatgatttaaaattttgatgaccaataccaaaaatcaaattta |
306 |
Q |
| |
|
|| |||||||||| ||||| ||| |||||| ||||| |||||||| | |||||| | |||||||||| || |||||| |||||||| | | |
|
|
| T |
20438399 |
aagcggtcagctgcatttaa-tacaattctcaggaatatcaaagatcgcaatatagatgtgatttaaaaaatttatgacctataccaaattt-----tct |
20438306 |
T |
|
| Q |
307 |
ataagctactacttacccgcatccttttggcaatttcagcttttggcagttaaaccatgagtcccctgtctcggcaataacagcagtttcactcgacaac |
406 |
Q |
| |
|
|||||||| |||||||| ||||||||| ||||||| ||||||||||| |||||||| |||||| |||||| |||||||| ||||||||||| |||| | |
|
|
| T |
20438305 |
ataagctattacttacctacatccttttagcaatttgagcttttggcaattaaaccaagagtccaatgtctcagcaataactgcagtttcactggacagc |
20438206 |
T |
|
| Q |
407 |
atattctgaatatgttgaaaaagaacattaaccctcaaaggctctctaggttcagatttaaccggcaaaccttcaggaacaaaaatcctgaaataattct |
506 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||| || |||||||||||||||||||||||| ||||| |||| |
|
|
| T |
20438205 |
atatactgaatatgttgaaaaagaacattaaccttcaaaggctctctatgttcagatttcacaaacaaaccttcaggaacaaaaatcctaaaatagttct |
20438106 |
T |
|
| Q |
507 |
cataagcagtatt |
519 |
Q |
| |
|
||||||||||||| |
|
|
| T |
20438105 |
cataagcagtatt |
20438093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 12 - 182
Target Start/End: Complemental strand, 20436052 - 20435882
Alignment:
| Q |
12 |
acagaccatccaattgaaccatattgcatttggaactcataactgtaaacaagttctttttatcaaaatatgctacaaaaacaataacttaacaaggttt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20436052 |
acagaccatccaattgaaccatattgcatttggaactcataactgtaaacaagttctttttatcaaaatatgctacaaaaacaataacttaacaaggttt |
20435953 |
T |
|
| Q |
112 |
tgaagaagnnnnnnnntgtgatcgcgacttgtggttaaaaatcaaagtttttgatgcatatgtgaccttaa |
182 |
Q |
| |
|
|||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
20435952 |
tgaagaagaaaaaaaatgtgatcgcgacttgtagtgaaaaatcaaagtttttgatgcatatgtgaccttaa |
20435882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 316 - 445
Target Start/End: Complemental strand, 20438835 - 20438707
Alignment:
| Q |
316 |
tacttacccgcatccttttggcaatttcagcttttggcagttaaaccatgagtcccctgtctcggcaataacagcagtttcactcgacaacatattctga |
415 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||| | ||||| |||| || |||| | ||||||||||| ||| |
|
|
| T |
20438835 |
tacttacccacatttttttggcaatttcagcttttggcagttaaaccaagagtcccctgtcaccgcaatgacagtag-ttcattggacaacatattttga |
20438737 |
T |
|
| Q |
416 |
atatgttgaaaaagaacattaaccctcaaa |
445 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |
|
|
| T |
20438736 |
atatgttgtaaaagaacattaaccctcaaa |
20438707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 9e-25; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 317 - 447
Target Start/End: Complemental strand, 25605712 - 25605582
Alignment:
| Q |
317 |
acttacccgcatccttttggcaatttcagcttttggcagttaaaccatgagtcccctgtctcggcaataacagcagtttcactcgacaacatattctgaa |
416 |
Q |
| |
|
|||||||| ||||| | |||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| | || | |
|
|
| T |
25605712 |
acttacccacatccctcgggcaatttcaatttttgacagttaaaccatgagtcccctgtctcagcaatcacagcagtttccctcgacaacatctgttgta |
25605613 |
T |
|
| Q |
417 |
tatgttgaaaaagaacattaaccctcaaagg |
447 |
Q |
| |
|
||||||| || | ||||||||| |||||||| |
|
|
| T |
25605612 |
tatgttggaacataacattaactctcaaagg |
25605582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 317 - 465
Target Start/End: Complemental strand, 25625344 - 25625196
Alignment:
| Q |
317 |
acttacccgcatccttttggcaatttcagcttttggcagttaaaccatgagtcccctgtctcggcaataacagcagtttcactcgacaacatattctgaa |
416 |
Q |
| |
|
|||||||| ||||| | || ||||||| ||||||||||||||||||||||||||||||||| ||||| ||| | |||||||| |||||||| | || | |
|
|
| T |
25625344 |
acttacccacatccctccggtaatttcaacttttggcagttaaaccatgagtcccctgtctcagcaatcacaactgtttcactagacaacatttgttgta |
25625245 |
T |
|
| Q |
417 |
tatgttgaaaaagaacattaaccctcaaaggctctctaggttcagattt |
465 |
Q |
| |
|
||||||| || | |||||| || ||||| || ||| | || |||||||| |
|
|
| T |
25625244 |
tatgttggaacataacattgactctcaatggttcttttggctcagattt |
25625196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 25605832 - 25605792
Alignment:
| Q |
12 |
acagaccatccaattgaaccatattgcatttggaactcata |
52 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
25605832 |
acagaccatccaattgaaccatattgcatttgaaactcata |
25605792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 25625473 - 25625433
Alignment:
| Q |
12 |
acagaccatccaattgaaccatattgcatttggaactcata |
52 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
25625473 |
acagaccatccaattgaaccatattgcatttgaaactcata |
25625433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 440 - 512
Target Start/End: Original strand, 2065126 - 2065198
Alignment:
| Q |
440 |
ctcaaaggctctctaggttcagatttaaccggcaaaccttcaggaacaaaaatcctgaaataattctcataag |
512 |
Q |
| |
|
||||||||||||||||||||| |||| | |||||||||||||||| ||| ||||| |||||||| ||||||| |
|
|
| T |
2065126 |
ctcaaaggctctctaggttcatatttcaatggcaaaccttcaggaataaatatcctaaaataattttcataag |
2065198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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