View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16815_low_21 (Length: 484)
Name: NF16815_low_21
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16815_low_21 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 13 - 484
Target Start/End: Original strand, 2560333 - 2560796
Alignment:
| Q |
13 |
ttggagttttttcatgcagggttaattgttggttttttctatattacctataaaaaattgagcttttattaccagggtcaatgatagtttatggatgtca |
112 |
Q |
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| T |
2560333 |
ttggagttttttcatgcagggttaattgttggttttttctatattacctataaaaaattgagcttttattaccagggtcaatgatagtttatggatgtca |
2560432 |
T |
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| Q |
113 |
cttgaaaatgtacttaagtgtccggtgtttattggtcggagaaattacctactattttttcatggataacctagatgtcaccttaatcgtttaaagatta |
212 |
Q |
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| T |
2560433 |
cttgaaaatgtacttaagtgtccgatgtttattggtcggataaattatctactattttttcatggataatctagatgtcactttaa-------------- |
2560518 |
T |
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| Q |
213 |
gaagctatgcgtaaccttaaa---tgttatagaaaaactattttggagagttt-gctcaaattgtatcttgactactgagattctcaagttattaattga |
308 |
Q |
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| T |
2560519 |
-aatctatgcgtaaccttaaaaaatgttatagaaaaactattttggagagttttgctcgaattgtatcttgactactgagattctcaagttattaattga |
2560617 |
T |
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| Q |
309 |
acttcaaataatgaagttcatggcaagataaatttt---ttctggttacaaaattcggtttatgttatatttattaaaatacttcattgtgattgcgatg |
405 |
Q |
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| T |
2560618 |
acttcaaataatgaagttcatggcaagataaatttttttttctggttacaaaattcggtttatgttatatttattaaaatacttcattgtgattgcgatg |
2560717 |
T |
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| Q |
406 |
catcgtctactcgtgtgtactacaaactacaagtacaaagcttatggcaagataaatgaaatctatgtataatgtgtta |
484 |
Q |
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| T |
2560718 |
catcgtctactcgtgtgtactacaaactacaagtacaaagcttatggcaagataaatgaaatctatgtataatgtgtta |
2560796 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 197
Target Start/End: Complemental strand, 33896900 - 33896840
Alignment:
| Q |
138 |
tgtttattggtcggag-aaattacctactattttttcatggataacctagatgtcacctta |
197 |
Q |
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| T |
33896900 |
tgtttattggttggagtaaattacccaccattttttcatgggtaccctagttgtcacctta |
33896840 |
T |
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