View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16815_low_23 (Length: 455)
Name: NF16815_low_23
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16815_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 16 - 399
Target Start/End: Original strand, 5579131 - 5579514
Alignment:
| Q |
16 |
cattcaacatgtttttaaactgtgaattcaaacatgtgtatctcaacatatactccattcaagggatcaacaatgctgatgaaaaggatccaacagatgc |
115 |
Q |
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| T |
5579131 |
cattcaacatgtttttaaactgtgaattcaaacatgtgtatctcaacatatactccattcaagggatcaacaatgctgatgaaaaggatccaacagatgc |
5579230 |
T |
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| Q |
116 |
tattttacaatcttattttacaatctagatcaatactactaacttgcagtgttctctgactgaactgtatcaacaatgctaatagtatcaatactactaa |
215 |
Q |
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| T |
5579231 |
tattttacaatcttattttacaatctagatcaatactactaacttgcagtgttctctgactgaactgtatcaacaatgctaatagtatcaatactactaa |
5579330 |
T |
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| Q |
216 |
cttgcaggcagtgttctgtgatcgaagtgtaccgaggcttctagtatttgaaacaattgatgatgtacaccatccttaatattttatttcaagttaggaa |
315 |
Q |
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| T |
5579331 |
cttgcaggcagtgttctgtgatcgaagtgtacggaggcttctagtatttgaaacaattgatgatgtacaccatccttaatattttatttcaagttaggaa |
5579430 |
T |
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| Q |
316 |
gtgnnnnnnngccattttcttctattccaagaaacccatccaaataacaaaaccaaagcaa-catcatgtttgcaacaactcaga |
399 |
Q |
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| T |
5579431 |
gtg-aaaaaagccattttcttctattccaagaaacccacccaaataacaaaaccaaagcaagcatcatgtttgcaacaactcaga |
5579514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 100
Target Start/End: Complemental strand, 29877508 - 29877479
Alignment:
| Q |
71 |
cattcaagggatcaacaatgctgatgaaaa |
100 |
Q |
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| T |
29877508 |
cattcaagggatcaacaatgctgatgaaaa |
29877479 |
T |
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