View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16815_low_26 (Length: 443)
Name: NF16815_low_26
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16815_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-165; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 16 - 429
Target Start/End: Complemental strand, 21492631 - 21492218
Alignment:
| Q |
16 |
aagaagatggtaattttgaagacatgatgatactcataatattatgtagttttgatagtaagtgaatgaacatgcatgttgatgacacatatttatacac |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||| |
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| T |
21492631 |
aagaagatggtaattttgaagacatgatgatactcataatattatgtagttttgatagtatgtgaatgagcatgcatgttgatgacatatatttatacac |
21492532 |
T |
|
| Q |
116 |
attatttgcttactatttcttccttttcgtttggagaatatactcaagtagtggtgcaacctaaatttttaattagcaacgtcaccagcaccaaattaat |
215 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
21492531 |
attatttgctcactatttcttccttttcgtttggagaatatactgaagtagtggtgcaacctaaattattaattagcaacgtcaccagcaccaacttaat |
21492432 |
T |
|
| Q |
216 |
tagtggtattgctgcccaattgacagagttttcttcgtcgtcatcttactcatgacaatcctttctggcctttcttagtgaaaatggcaattgtaatgcc |
315 |
Q |
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| T |
21492431 |
tagtggtatggctacccaattgacagagttttcttcttcgtcatcttactcatgacaatcctttctggcctttcttattgaaaatggcaattgtaatgcc |
21492332 |
T |
|
| Q |
316 |
caactgatcaaaagtttcnnnnnnnnnnnnnnnnnnnnnnnnngcaaatcaagtttctaaatgttgagatacaccaaacttacaccaagattggaagttt |
415 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21492331 |
caactgatcaaaagtttctaatataataatataacatatatatgcaaatcaagtttctaaatgttgagatacaccaaacttacaccaagattggaagttt |
21492232 |
T |
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| Q |
416 |
caattgttgttagt |
429 |
Q |
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|||||||||||||| |
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| T |
21492231 |
caattgttgttagt |
21492218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 326
Target Start/End: Complemental strand, 21488818 - 21488499
Alignment:
| Q |
16 |
aagaagatggtaattttgaagacatgatgatactcataatattatgtagttttgatagtaa---------gtgaatgaacatgcatgttgatgacacata |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||| |||||||| ||||||||||||||||||||| |
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| T |
21488818 |
aagaagatggtaattttgaagacatgatgatactcataatagtatgaagttttgattgtattgatgagttgtgaatgagcatgcatgttgatgacacata |
21488719 |
T |
|
| Q |
107 |
tttatacacattatttgcttactatttcttccttttcgtttggagaatatactcaagtagtggtgcaacctaaatttttaattagcaacgtcaccagcac |
206 |
Q |
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|||||||| || ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21488718 |
tttatacaaatgatttgcttactatttcttccttttcctttggagaatatactgaagtagtggtgcaacctaaatttttaattagcaacgtcaccagcac |
21488619 |
T |
|
| Q |
207 |
caaattaattagtggtattgctgcccaattgacagagttttcttcgtcgtcatcttactcatgacaatcctttctggcctttcttagtgaaaatggcaat |
306 |
Q |
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||| |||||||||||||||||||||||||| |||| |||||||| || ||||||||||||||||||| ||| ||||||||||||| ||||||| ||||| |
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| T |
21488618 |
caacttaattagtggtattgctgcccaattaccagatttttcttcttcatcatcttactcatgacaatgcttcctggcctttcttattgaaaattgcaat |
21488519 |
T |
|
| Q |
307 |
tgtaatgcccaactgatcaa |
326 |
Q |
| |
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|||||||||||||||||||| |
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| T |
21488518 |
tgtaatgcccaactgatcaa |
21488499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 21482402 - 21482340
Alignment:
| Q |
77 |
gtgaatgaacatgcatgttgatgacacatatttatacacattatttgcttactatttcttcct |
139 |
Q |
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| T |
21482402 |
gtgaatgagcatgcaggttgatgacacatatttatacacattatttgcttactatttcttcct |
21482340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 21482473 - 21482440
Alignment:
| Q |
22 |
atggtaattttgaagacatgatgatactcataat |
55 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
21482473 |
atggtaattttgaagacatgatgatactcataat |
21482440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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