View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16815_low_30 (Length: 422)
Name: NF16815_low_30
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16815_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 378; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 16 - 413
Target Start/End: Complemental strand, 35985648 - 35985251
Alignment:
| Q |
16 |
aatgtttctaaatttaagagagaagacacgtcaggtatttctgtcaaacaatctgcatcatcaaaattcaatatcttcatatttatgaacttttgcaaaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35985648 |
aatgtttctaaatttaagagagaagacacgtcaggtatttctgtcaaacaatctgcatcatcaaaattcaatatcttcatatttatgaacttttgcaaaa |
35985549 |
T |
|
| Q |
116 |
taaataaagaaatgagaaccaaatggataatgttaaaaatgaagttatggttaacttgcattgcataccaaggcaacgaagattatactaattaccttca |
215 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35985548 |
taaataaagaaatgagaaccaaatggataatgtgaaaaatgaagttatggttaacttgcattgcataccaaggcaacgaagattagactaattaccttca |
35985449 |
T |
|
| Q |
216 |
ataaatcggtcaacttgagtgacgttaagcaactttttggtaacttgattatggcaggtttctttggatgaaaatcatatggaaaatattctgaaggata |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35985448 |
ataaatcggtcaacttgagtgacgttaagcaactttttggtaacttgattatggcaggtttctttggatgaaaatcatatggcaaatattctgaaggata |
35985349 |
T |
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| Q |
316 |
tctccaccattcaaccgctcttaaactatttggaagatgtttgggtcctttggaaaaatggccacctctgattgtaagagtttttaggtttttcatct |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
35985348 |
tctccaccattcaaccgctcttaaactatttggaagatgtttgggtcctttggaaaaatggccacctttgattgtaagagtttttagggttttcatct |
35985251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 207 - 411
Target Start/End: Complemental strand, 31907138 - 31906934
Alignment:
| Q |
207 |
ttaccttcaataaatcggtcaacttgagtgacgttaagcaactttttggtaacttgattatggcaggtttctttggatgaaaatcatatggaaaatattc |
306 |
Q |
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||||||||| ||| || ||||||||||||||| |||||| |||||||||||||| || ||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
31907138 |
ttaccttcattaagtcagtcaacttgagtgacattaagctactttttggtaactcgaatatggcaagtttctttggattaaaatcatatggaaaatattc |
31907039 |
T |
|
| Q |
307 |
tgaaggatatctccaccattcaaccgctcttaaactatttggaagatgtttgggtcctttggaaaaatggccacctctgattgtaagagtttttaggttt |
406 |
Q |
| |
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||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||| |||||||||||| |
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| T |
31907038 |
tgaaggataattccaccattccactactcttaaactatttggaagatgtttgggtcctttggagaaatggccacctttgataataagtgtttttaggttt |
31906939 |
T |
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| Q |
407 |
ttcat |
411 |
Q |
| |
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||||| |
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| T |
31906938 |
ttcat |
31906934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 244 - 365
Target Start/End: Original strand, 16371167 - 16371288
Alignment:
| Q |
244 |
gcaactttttggtaacttgattatggcaggtttctttggatgaaaatcatatggaaaatattctgaaggatatctccaccattcaaccgctcttaaacta |
343 |
Q |
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|||||||| |||||||||| |||||| ||||||||||||||||||||| ||| || || ||||||||| | ||||||||| | | ||||||||||| |
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| T |
16371167 |
gcaactttcaggtaacttgagcatggcaagtttctttggatgaaaatcatttggtaatgatggtgaaggatacccccaccattccaacactcttaaacta |
16371266 |
T |
|
| Q |
344 |
tttggaagatgtttgggtcctt |
365 |
Q |
| |
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|| ||||||||| |||| |||| |
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| T |
16371267 |
ttgggaagatgtgtggggcctt |
16371288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 31907333 - 31907240
Alignment:
| Q |
21 |
ttctaaatttaagagagaagacacgtcaggtatttctgtcaaacaatctgcatcatcaaaattcaatatcttcatatttatgaacttttgcaaa |
114 |
Q |
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|||||||||||| |||||||| |||||||||||||| ||| | || || |||||||||||||| ||||||||||| | |||||| |||||| |
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| T |
31907333 |
ttctaaatttaaaagagaagatgtatcaggtatttctgttaaaaattccgcgtcatcaaaattcaaaatcttcatattcaagaacttctgcaaa |
31907240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 307 - 372
Target Start/End: Complemental strand, 16693128 - 16693063
Alignment:
| Q |
307 |
tgaaggatatctccaccattcaaccgctcttaaactatttggaagatgtttgggtcctttggaaaa |
372 |
Q |
| |
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|||||||||||| |||||||| | ||||||||||||||||||||||||| |||||||||||||| |
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| T |
16693128 |
tgaaggatatctatgccattcaagcactcttaaactatttggaagatgttttggtcctttggaaaa |
16693063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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