View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16815_low_36 (Length: 398)
Name: NF16815_low_36
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16815_low_36 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 32001922 - 32001518
Alignment:
| Q |
1 |
tgtattttgatgttcaattaatacaataagtttatatattattttcttagttaagaccctatcttattctcaaatgcaatatagaacactttttaaaaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32001922 |
tgtattttgatgttcaattaatacaataagtttatatattattttcttagttaagaccctatcttattctcaaatgcaatatagaacacaatttaaaaat |
32001823 |
T |
|
| Q |
101 |
aagaagcatcatatttgaattccaattatacacacaatcttgcatgtgtc-aatcaagaatgttggatcaattgttcagacacatttcacctttgtattt |
199 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
32001822 |
aagaagcatcatatttaaattccaattatgcacacaatctggcatgtgtcaaatcaagaatgtcagatcaattgttcagacacatttcacctttgtattt |
32001723 |
T |
|
| Q |
200 |
tagac-----nnnnnnnnnnnnnacc-aaaatgggaatttgagttgtttgatatcaattagcgcaattttacaattgctaatcatgatcatcaaattaag |
293 |
Q |
| |
|
||||| ||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32001722 |
tagacttttttttttttttttataccaaaaatgggaatgtgagttgtttgataccaattagcgcaattttacaattgctaatcatgatcgtcaaattaag |
32001623 |
T |
|
| Q |
294 |
attttaattctgactttgtattttgaactcgttcattaaaataaaatgtctagannnnnnnngtctagatcggataattgcatcaaatgcattaaaattc |
393 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32001622 |
attttagttctgactttgtattttggactcgttcattaaaataaaatgtctagattttttttgtctagatcgtataattgcatcaaatgcattaaaattc |
32001523 |
T |
|
| Q |
394 |
cacct |
398 |
Q |
| |
|
||||| |
|
|
| T |
32001522 |
cacct |
32001518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University