View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16815_low_38 (Length: 361)
Name: NF16815_low_38
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16815_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 52144449 - 52144707
Alignment:
| Q |
1 |
atgaataatgaaaattgaagaccactaagtctaagaaataatagcttcacttactaat---aagagttataagaatgtggaaggggaaagaagtgaacat |
97 |
Q |
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| T |
52144449 |
atgaataatgaaaattgaagaccactaagtcgaagaaataatagcttcacttactaataataagagttataagaatgtggaaggggaaagaagtgaacat |
52144548 |
T |
|
| Q |
98 |
ccattactaagaagtttaattggatatgtgccatatcattggagggtctcttaat-aattgtaaagagagattttagtctaaatgatttaaatcaatcaa |
196 |
Q |
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| T |
52144549 |
ccattactaagaagtttaattggatatgtgccatatcattggagggtctcttaataaattgtaaagagacattttagtctaaatgatttaaatcaatca- |
52144647 |
T |
|
| Q |
197 |
tataatagcacattatttctctaaacacagctttctccgttaaagaacctttagaatgcaa |
257 |
Q |
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|||||||||||||||||||||||||||||| ||||||| |||||| |||||||| ||||| |
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| T |
52144648 |
-ataatagcacattatttctctaaacacagccttctccgctaaagatcctttagattgcaa |
52144707 |
T |
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