View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16815_low_4 (Length: 846)
Name: NF16815_low_4
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16815_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 788; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 788; E-Value: 0
Query Start/End: Original strand, 11 - 830
Target Start/End: Complemental strand, 49446469 - 49445650
Alignment:
| Q |
11 |
agcagcacagagctatatcaccaagaagcctgttttcgcttcagctagtctgtgtattctgttttgctttcacgtaattccatcaaaagtttttgccttg |
110 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49446469 |
agcaacacagagctatatcaccaagaagcctgttttcgcttcagcgagtctgtgtattctgttttgctttcacgtaattccatcaaaagtttttgccttg |
49446370 |
T |
|
| Q |
111 |
gcattacatatggtgaggagggcatcattggctttccccatgtcgtcaaatgggtcaaccatgttgtacaaagcggagttgagaccattgatctccttgt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49446369 |
gcattacatatggtgaggagggcatcattggctttccccatgtcgtcaaatgggtcaaccatgttgtacaaagcggagttgagaccattgatctccttgt |
49446270 |
T |
|
| Q |
211 |
ggatactatgtttggtggtggtcctaaattgcctattagcattctcagctgcaagactcttgttgttctcaaatttcagcgtttctctgtgaagggcttt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49446269 |
ggatactatgtttggtggtggtcctaaattgcctattagcattctcagctgcaagactcttgttgttctcaaatttcagcgtttctctgtgaagggcttt |
49446170 |
T |
|
| Q |
311 |
acttccattagacttccctgcctcaaaatccttcatctcagcgaatctgggttttttaatattcaagatttcatgttgcttttggctggatgtccaattc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
49446169 |
acttccattagacttccctgcctcaaaatccttcatctcagcgaatctgggttttttaatattcaagatttcatgttgcttttgactggatgtccaattc |
49446070 |
T |
|
| Q |
411 |
ttgaagaattacaagcacatcatataggtttcagatctgaggattctattacatatcaagagcgtaatagctcaagcttaagtttaagcaagttgaccag |
510 |
Q |
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| T |
49446069 |
ttgaagaattacaagcacatcatataggtttcagatctgaggattctattacatatcaagagcgtaatagctcaagcttaagtttaagcaagttgaccag |
49445970 |
T |
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| Q |
511 |
agcaaatatggtttgcttttattgtgattttccgttgaaggcactctgtaatgtggagtttctctgcatacaaatagacgaggtttgaattttactatga |
610 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49445969 |
agcaaatatggtttgcttttattgtgattttccgttgaaggcactctgtaatgtggagtttctctgcatacaaatagacgaggtttgaattttactatga |
49445870 |
T |
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| Q |
611 |
atatgttgctaagtaaaaacactaatcgaaaggagatgaaaaacctgattggtgtgtattttcgattatgccttgttttgataattttcccttatttctg |
710 |
Q |
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||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
49445869 |
atatgttgctacggaaaaacactaatcgaaaggagatgaaaaacctgattggtgtgtattttcgattatgccttgttttggtaattttcccttatttctg |
49445770 |
T |
|
| Q |
711 |
agtgtttgtctttctacattgttgtttagatgtatcgccctcatgaaaagattcccatctttcataatttggcccacttgaagcttctctctctcaacta |
810 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49445769 |
agtgtttgtctttctacattgttgtttagatgtatcgccctcatgacgagattcccatctttcataatttggcccacttgaagcttctctctctcaacta |
49445670 |
T |
|
| Q |
811 |
taactggaagctgttagtac |
830 |
Q |
| |
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|||||||||||||||||||| |
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| T |
49445669 |
taactggaagctgttagtac |
49445650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 236 - 344
Target Start/End: Complemental strand, 17642192 - 17642084
Alignment:
| Q |
236 |
aaattgcctattagcattctcagctgcaagactcttgttgttctcaaatttcagcgtttctctgtgaagggctttacttccattagacttccctgcctca |
335 |
Q |
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||||||| | |||||||||| | ||||| |||||||||||||||| | ||| | | ||| |||||||||| ||| ||| | ||||||| | || ||||| |
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| T |
17642192 |
aaattgcttgttagcattctaacctgcaggactcttgttgttctcgagttttatgggttcgctgtgaaggggttttctttctttagactcctctccctca |
17642093 |
T |
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| Q |
336 |
aaatccttc |
344 |
Q |
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||||||||| |
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| T |
17642092 |
aaatccttc |
17642084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 386 - 423
Target Start/End: Complemental strand, 49434727 - 49434690
Alignment:
| Q |
386 |
ttgcttttggctggatgtccaattcttgaagaattaca |
423 |
Q |
| |
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|||||||||||||||||||||||||| ||||| ||||| |
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| T |
49434727 |
ttgcttttggctggatgtccaattctagaagatttaca |
49434690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 384 - 417
Target Start/End: Complemental strand, 49438572 - 49438539
Alignment:
| Q |
384 |
tgttgcttttggctggatgtccaattcttgaaga |
417 |
Q |
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|||||||| ||||||||||||||||||||||||| |
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| T |
49438572 |
tgttgcttctggctggatgtccaattcttgaaga |
49438539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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