View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16815_low_40 (Length: 361)

Name: NF16815_low_40
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16815_low_40
NF16815_low_40
[»] chr6 (19 HSPs)
chr6 (10-282)||(13490623-13490898)
chr6 (170-282)||(16587367-16587479)
chr6 (170-282)||(16607901-16608013)
chr6 (280-337)||(13492356-13492413)
chr6 (188-282)||(21719481-21719570)
chr6 (280-317)||(13828120-13828157)
chr6 (280-318)||(5008268-5008306)
chr6 (280-317)||(5486922-5486959)
chr6 (280-317)||(8719656-8719693)
chr6 (280-317)||(15389213-15389250)
chr6 (280-317)||(19826376-19826413)
chr6 (280-317)||(30822980-30823017)
chr6 (280-316)||(11063998-11064034)
chr6 (280-316)||(14475915-14475951)
chr6 (280-316)||(25699922-25699958)
chr6 (280-316)||(27537740-27537776)
chr6 (280-316)||(27551949-27551985)
chr6 (280-316)||(28304555-28304591)
chr6 (280-316)||(33300449-33300485)
[»] chr8 (16 HSPs)
chr8 (170-282)||(25703007-25703119)
chr8 (280-316)||(25719382-25719418)
chr8 (280-316)||(36249076-36249112)
chr8 (280-318)||(1388090-1388128)
chr8 (280-318)||(26871210-26871248)
chr8 (280-317)||(39836009-39836046)
chr8 (280-316)||(4837362-4837398)
chr8 (280-316)||(4842807-4842843)
chr8 (280-316)||(14335743-14335779)
chr8 (280-316)||(17529399-17529435)
chr8 (280-316)||(22103424-22103460)
chr8 (280-316)||(25584851-25584887)
chr8 (280-316)||(25796901-25796937)
chr8 (280-316)||(30939856-30939892)
chr8 (280-316)||(31000605-31000641)
chr8 (280-316)||(39844052-39844088)
[»] chr3 (31 HSPs)
chr3 (170-282)||(16289111-16289223)
chr3 (27-94)||(16815795-16815862)
chr3 (280-317)||(50826877-50826914)
chr3 (280-317)||(50848939-50848976)
chr3 (280-316)||(27880697-27880733)
chr3 (280-318)||(2214917-2214955)
chr3 (280-318)||(4456739-4456777)
chr3 (280-318)||(14426152-14426190)
chr3 (280-317)||(8196216-8196253)
chr3 (280-317)||(13555714-13555751)
chr3 (280-317)||(17360597-17360634)
chr3 (280-317)||(17365239-17365276)
chr3 (280-317)||(17630628-17630665)
chr3 (280-317)||(17935592-17935629)
chr3 (280-317)||(18351549-18351586)
chr3 (280-317)||(22094890-22094927)
chr3 (280-317)||(30062628-30062665)
chr3 (280-316)||(2256948-2256984)
chr3 (280-316)||(4435948-4435984)
chr3 (280-316)||(8153128-8153164)
chr3 (280-316)||(10713426-10713462)
chr3 (280-316)||(10720700-10720736)
chr3 (280-316)||(13847669-13847705)
chr3 (280-316)||(14520712-14520748)
chr3 (280-316)||(18900359-18900395)
chr3 (280-316)||(18949441-18949477)
chr3 (280-316)||(27338859-27338895)
chr3 (280-316)||(27550643-27550679)
chr3 (280-316)||(41016914-41016950)
chr3 (280-316)||(43468073-43468109)
chr3 (280-316)||(51922060-51922096)
[»] chr2 (30 HSPs)
chr2 (170-282)||(21149584-21149696)
chr2 (170-249)||(28479499-28479578)
chr2 (188-267)||(31356717-31356797)
chr2 (280-317)||(19655562-19655599)
chr2 (280-317)||(41232314-41232351)
chr2 (280-316)||(34068674-34068710)
chr2 (280-318)||(35304918-35304956)
chr2 (280-317)||(6855956-6855993)
chr2 (280-317)||(15942987-15943024)
chr2 (280-317)||(17684934-17684971)
chr2 (280-317)||(20364528-20364565)
chr2 (280-317)||(20921053-20921090)
chr2 (280-317)||(26896527-26896564)
chr2 (280-317)||(38153998-38154035)
chr2 (280-317)||(42564375-42564412)
chr2 (280-317)||(44375377-44375414)
chr2 (280-317)||(44390958-44390995)
chr2 (280-316)||(14630626-14630662)
chr2 (280-316)||(15951498-15951534)
chr2 (280-316)||(25493438-25493474)
chr2 (280-316)||(25496171-25496207)
chr2 (280-316)||(26717500-26717536)
chr2 (280-316)||(26731633-26731669)
chr2 (280-316)||(28481564-28481600)
chr2 (316-344)||(33771061-33771089)
chr2 (280-316)||(34527846-34527882)
chr2 (280-316)||(34541820-34541856)
chr2 (280-316)||(35140195-35140231)
chr2 (280-316)||(35148536-35148572)
chr2 (280-316)||(42573000-42573036)
[»] chr5 (13 HSPs)
chr5 (170-282)||(21852094-21852201)
chr5 (170-231)||(21868664-21868725)
chr5 (317-346)||(21886202-21886231)
chr5 (280-316)||(19226190-19226226)
chr5 (280-316)||(20370578-20370614)
chr5 (280-316)||(20396266-20396302)
chr5 (280-316)||(28845516-28845552)
chr5 (280-316)||(28854126-28854162)
chr5 (280-316)||(29190442-29190478)
chr5 (280-316)||(31413183-31413219)
chr5 (280-316)||(31424089-31424125)
chr5 (280-316)||(33835130-33835166)
chr5 (280-316)||(36458945-36458981)
[»] chr4 (13 HSPs)
chr4 (170-282)||(24922854-24922961)
chr4 (280-316)||(27341512-27341548)
chr4 (280-319)||(773517-773556)
chr4 (280-317)||(12425215-12425252)
chr4 (280-317)||(12998899-12998936)
chr4 (280-317)||(55584159-55584196)
chr4 (280-316)||(8092736-8092772)
chr4 (280-316)||(8101541-8101577)
chr4 (280-316)||(20865659-20865695)
chr4 (280-316)||(21530105-21530141)
chr4 (280-316)||(25652449-25652485)
chr4 (280-316)||(26033961-26033997)
chr4 (280-316)||(52298058-52298094)
[»] scaffold0031 (1 HSPs)
scaffold0031 (280-316)||(346-382)
[»] chr1 (14 HSPs)
chr1 (280-316)||(51055115-51055151)
chr1 (280-318)||(31550096-31550134)
chr1 (280-317)||(13461296-13461333)
chr1 (280-317)||(13803852-13803889)
chr1 (280-317)||(23355412-23355449)
chr1 (280-317)||(32135107-32135144)
chr1 (280-317)||(41744501-41744538)
chr1 (280-316)||(13452401-13452437)
chr1 (280-316)||(21055244-21055280)
chr1 (280-316)||(21244871-21244907)
chr1 (280-316)||(28991106-28991142)
chr1 (280-316)||(31541527-31541563)
chr1 (280-316)||(35097378-35097414)
chr1 (280-316)||(43456413-43456449)
[»] scaffold0431 (1 HSPs)
scaffold0431 (280-317)||(4723-4760)
[»] scaffold0278 (1 HSPs)
scaffold0278 (280-317)||(10746-10783)
[»] scaffold0044 (2 HSPs)
scaffold0044 (280-317)||(63937-63974)
scaffold0044 (280-316)||(80338-80374)
[»] chr7 (13 HSPs)
chr7 (280-317)||(1886731-1886768)
chr7 (280-317)||(13478067-13478104)
chr7 (280-317)||(17739182-17739219)
chr7 (280-317)||(24185926-24185963)
chr7 (280-316)||(1900833-1900869)
chr7 (280-316)||(4661689-4661725)
chr7 (280-316)||(5198980-5199016)
chr7 (280-316)||(5208097-5208133)
chr7 (280-316)||(10449657-10449693)
chr7 (280-316)||(13833077-13833113)
chr7 (29-77)||(16225757-16225805)
chr7 (280-316)||(18302861-18302897)
chr7 (280-316)||(44075014-44075050)
[»] scaffold0462 (1 HSPs)
scaffold0462 (280-316)||(13635-13671)
[»] scaffold0392 (1 HSPs)
scaffold0392 (280-316)||(16395-16431)
[»] scaffold0257 (1 HSPs)
scaffold0257 (280-316)||(10509-10545)
[»] scaffold0222 (1 HSPs)
scaffold0222 (280-316)||(9802-9838)
[»] scaffold0156 (1 HSPs)
scaffold0156 (280-316)||(29569-29605)
[»] scaffold0056 (2 HSPs)
scaffold0056 (280-316)||(11548-11584)
scaffold0056 (280-316)||(30250-30286)
[»] scaffold0015 (1 HSPs)
scaffold0015 (280-316)||(195082-195118)


Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 10 - 282
Target Start/End: Original strand, 13490623 - 13490898
Alignment:
Q  10 tcatcatttttacctgcagaaactctattttctagctgtataaataccactacatttattgcagtcagtgagcaatcaatcactgtacaaagactgactg 109  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||| ||||||||||    
T  13490623 tcatcatttttacctgcagaaatcctattttctagctgtataaataccactgcatttattgcagtcagtgaacaatcaatcactttacagagactgactg 13490722  T
Q  110 acaattggcagcagccacaccagtcttttc---aaaaaaccctaatctgcttctttctcatcaattttcagatcaaacccgtttttcaaagaaatttcct 206  Q
    |||||||||||||||| |||||||||||||   ||||||||||||||  ||||| ||||||||||||||| ||||| ||||||||| |||||||||||||    
T  13490723 acaattggcagcagccgcaccagtcttttcaaaaaaaaaccctaatccacttctctctcatcaattttcaaatcaatcccgttttttaaagaaatttcct 13490822  T
Q  207 caagaacattcatcaaatcaaaaatcgagaaagatcacataatgtaattctaattctcttttttcagatctgttca 282  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  13490823 caagaacattcatcaaataaaaaatccagaaagatcacataatgtaattccaattctctttttccagatctgttca 13490898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 170 - 282
Target Start/End: Original strand, 16587367 - 16587479
Alignment:
Q  170 attttcagatcaaacccgtttttcaaagaaatttcctcaagaacattcatcaaatcaaaaatcgagaaagatcacataatgtaattctaattctcttttt 269  Q
    |||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||| ||||||||||||    
T  16587367 atttacagatcaaaccattttttcaaagaaatttcctcaagaacattcatcaaatcaaaaatccaggaagatcatataatgtaattccaattctcttttt 16587466  T
Q  270 tcagatctgttca 282  Q
     ||||||||||||    
T  16587467 ccagatctgttca 16587479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 170 - 282
Target Start/End: Complemental strand, 16608013 - 16607901
Alignment:
Q  170 attttcagatcaaacccgtttttcaaagaaatttcctcaagaacattcatcaaatcaaaaatcgagaaagatcacataatgtaattctaattctcttttt 269  Q
    |||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||| ||||||||||||    
T  16608013 atttacagatcaaaccattttttcaaagaaatttcctcaagaacattcatcaaatcaaaaatccaggaagatcatataatgtaattccaattctcttttt 16607914  T
Q  270 tcagatctgttca 282  Q
     ||||||||||||    
T  16607913 ccagatctgttca 16607901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 280 - 337
Target Start/End: Original strand, 13492356 - 13492413
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaaaggcttataagaattgtttg 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13492356 tcaattaatggtttgatattcaaaaatcacgagcacaaaggcttataagaattgtttg 13492413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 188 - 282
Target Start/End: Complemental strand, 21719570 - 21719481
Alignment:
Q  188 tttttcaaagaaatttcctcaagaacattcatcaaatcaaaaatcgagaaagatcacataatgtaattctaattctcttttttcagatctgttca 282  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| | |||||||     || |||||| |||||||||||| ||||||||||||    
T  21719570 ttttttaaagaaatttcctcaagaacattcatcaaatcaaaaatccaaaaagatc-----atataattccaattctctttttccagatctgttca 21719481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 280 - 317
Target Start/End: Original strand, 13828120 - 13828157
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaa 317  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  13828120 tcaattaatggtttgatatccaaaaatcacgagcacaa 13828157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 318
Target Start/End: Original strand, 5008268 - 5008306
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaaa 318  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  5008268 tcaattaatggtttgatatccgaaaatcacgagcacaaa 5008306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Complemental strand, 5486959 - 5486922
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaa 317  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  5486959 tcaattaatggtttgatatccgaaaatcacgagcacaa 5486922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Complemental strand, 8719693 - 8719656
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaa 317  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  8719693 tcaattaatggtttgatatccgaaaatcacgagcacaa 8719656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Complemental strand, 15389250 - 15389213
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaa 317  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  15389250 tcaattaatggtttgatatccgaaaatcacgagcacaa 15389213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Complemental strand, 19826413 - 19826376
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaa 317  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  19826413 tcaattaatggtttgatatccgaaaatcacgagcacaa 19826376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Complemental strand, 30823017 - 30822980
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaa 317  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  30823017 tcaattaatggtttgatatccgaaaatcacgagcacaa 30822980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 11063998 - 11064034
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  11063998 tcaattaatggtttgatatccgaaaatcacgagcaca 11064034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 14475915 - 14475951
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  14475915 tcaattaatggtttgatatccgaaaatcacgagcaca 14475951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 25699922 - 25699958
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  25699922 tcaattaatggtttgatatccgaaaatcacgagcaca 25699958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 27537740 - 27537776
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  27537740 tcaattaatggtttgatatccgaaaatcacgagcaca 27537776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 27551949 - 27551985
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  27551949 tcaattaatggtttgatatccgaaaatcacgagcaca 27551985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 28304555 - 28304591
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  28304555 tcaattaatggtttgatatccaaaaatcgcgagcaca 28304591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 33300449 - 33300485
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  33300449 tcaattaatggtttgatatccgaaaatcacgagcaca 33300485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 170 - 282
Target Start/End: Original strand, 25703007 - 25703119
Alignment:
Q  170 attttcagatcaaacccgtttttcaaagaaatttcctcaagaacattcatcaaatcaaaaatcgagaaagatcacataatgtaattctaattctcttttt 269  Q
    |||| ||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  25703007 atttacagatcaaatcattttttcaaagaaatttcctcaagaacattcatcaaatcaaaaatccagaaagatcacataatgtaattccaattctcttttt 25703106  T
Q  270 tcagatctgttca 282  Q
     ||||||||||||    
T  25703107 ccagatctgttca 25703119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 25719382 - 25719418
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||||| |||||||||||||||    
T  25719382 tcaattaatggtttgatattcgaaaatcacgagcaca 25719418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 36249076 - 36249112
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||||| |||||||||||||||    
T  36249076 tcaattaatggtttgatattcgaaaatcacgagcaca 36249112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 318
Target Start/End: Complemental strand, 1388128 - 1388090
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaaa 318  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  1388128 tcaattaatggtttgatatccgaaaatcacgagcacaaa 1388090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 318
Target Start/End: Complemental strand, 26871248 - 26871210
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaaa 318  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  26871248 tcaattaatggtttgatatccgaaaatcacgagcacaaa 26871210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Complemental strand, 39836046 - 39836009
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaa 317  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  39836046 tcaattaatggtttgatatccgaaaatcacgagcacaa 39836009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 4837398 - 4837362
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  4837398 tcaattaatggtttgatatccgaaaatcacgagcaca 4837362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 4842843 - 4842807
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  4842843 tcaattaatggtttgatatccgaaaatcacgagcaca 4842807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 14335779 - 14335743
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  14335779 tcaattaatggtttgatatccgaaaatcacgagcaca 14335743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 17529399 - 17529435
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  17529399 tcaattaatggtttgatatccgaaaatcacgagcaca 17529435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 22103460 - 22103424
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  22103460 tcaattaatggtttgatatccgaaaatcacgagcaca 22103424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 25584887 - 25584851
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  25584887 tcaattaatggtttgatatccgaaaatcacgagcaca 25584851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 25796901 - 25796937
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  25796901 tcaattaatggtttgatatccgaaaatcacgagcaca 25796937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 30939856 - 30939892
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  30939856 tcaattaatggtttgatatccgaaaatcacgagcaca 30939892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 31000641 - 31000605
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  31000641 tcaattaatggtttgatatccaaaaatcgcgagcaca 31000605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 39844088 - 39844052
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  39844088 tcaattaatggtttgatatccgaaaatcacgagcaca 39844052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 5e-38; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 170 - 282
Target Start/End: Original strand, 16289111 - 16289223
Alignment:
Q  170 attttcagatcaaacccgtttttcaaagaaatttcctcaagaacattcatcaaatcaaaaatcgagaaagatcacataatgtaattctaattctcttttt 269  Q
    |||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||    
T  16289111 atttacagatcaaaccattttttcaaagaaatttcctcaagaacattcatcaaatcaaaaatccagaaagatcatataatgtaattccaattctcttttt 16289210  T
Q  270 tcagatctgttca 282  Q
     ||||| ||||||    
T  16289211 ccagatttgttca 16289223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 94
Target Start/End: Complemental strand, 16815862 - 16815795
Alignment:
Q  27 agaaactctattttctagctgtataaataccactacatttattgcagtcagtgagcaatcaatcactg 94  Q
    |||||| ||||||||||| ||||||||||||||| |||||| |||||||||| |  ||||||||||||    
T  16815862 agaaaccctattttctagttgtataaataccactgcatttactgcagtcagtcactaatcaatcactg 16815795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 280 - 317
Target Start/End: Original strand, 50826877 - 50826914
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaa 317  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  50826877 tcaattaatggtttgatatccaaaaatcacgagcacaa 50826914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 280 - 317
Target Start/End: Complemental strand, 50848976 - 50848939
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaa 317  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  50848976 tcaattaatggtttgatatccaaaaatcacgagcacaa 50848939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 27880697 - 27880733
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| |||||||||||||||||    
T  27880697 tcaattaatggtttgatatccaaaaatcacgagcaca 27880733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 318
Target Start/End: Complemental strand, 2214955 - 2214917
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaaa 318  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  2214955 tcaattaatggtttgatatccgaaaatcacgagcacaaa 2214917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 318
Target Start/End: Original strand, 4456739 - 4456777
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaaa 318  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  4456739 tcaattaatggtttgatatccgaaaatcacgagcacaaa 4456777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 318
Target Start/End: Original strand, 14426152 - 14426190
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaaa 318  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  14426152 tcaattaatggtttgatatccgaaaatcacgagcacaaa 14426190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Complemental strand, 8196253 - 8196216
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaa 317  Q
    |||| |||||||||||||| ||||||||||||||||||    
T  8196253 tcaaataatggtttgatatccaaaaatcacgagcacaa 8196216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Original strand, 13555714 - 13555751
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaa 317  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  13555714 tcaattaatggtttgatatccgaaaatcacgagcacaa 13555751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Original strand, 17360597 - 17360634
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaa 317  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  17360597 tcaattaatggtttgatatccgaaaatcacgagcacaa 17360634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Original strand, 17365239 - 17365276
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaa 317  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  17365239 tcaattaatggtttgatatccgaaaatcacgagcacaa 17365276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Original strand, 17630628 - 17630665
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaa 317  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  17630628 tcaattaatggtttgatatccgaaaatcacgagcacaa 17630665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Original strand, 17935592 - 17935629
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaa 317  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  17935592 tcaattaatggtttgatatccgaaaatcacgagcacaa 17935629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Original strand, 18351549 - 18351586
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaa 317  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  18351549 tcaattaatggtttgatatccgaaaatcacgagcacaa 18351586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Original strand, 22094890 - 22094927
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaa 317  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  22094890 tcaattaatggtttgatatccgaaaatcacgagcacaa 22094927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Complemental strand, 30062665 - 30062628
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaa 317  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  30062665 tcaattaatggtttgatatccgaaaatcacgagcacaa 30062628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 2256948 - 2256984
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  2256948 tcaattaatggtttgatatccgaaaatcacgagcaca 2256984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 4435948 - 4435984
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  4435948 tcaattaatggtttgatatccgaaaatcacgagcaca 4435984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 8153164 - 8153128
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  8153164 tcaattaatggtttgatatccgaaaatcacgagcaca 8153128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 10713462 - 10713426
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  10713462 tcaattaatggtttgatatccaaaaatcgcgagcaca 10713426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 10720736 - 10720700
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  10720736 tcaattaatggtttgatatccaaaaatcgcgagcaca 10720700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 13847705 - 13847669
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  13847705 tcaattaatggtttgatatccgaaaatcacgagcaca 13847669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 14520748 - 14520712
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  14520748 tcaattaatggtttgatatccgaaaatcacgagcaca 14520712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 18900395 - 18900359
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  18900395 tcaattaatggtttggtatccaaaaatcacgagcaca 18900359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 18949477 - 18949441
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  18949477 tcaattaatggtttgatatccgaaaatcacgagcaca 18949441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 27338895 - 27338859
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  27338895 tcaattaatggtttgatatccgaaaatcacgagcaca 27338859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 27550679 - 27550643
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  27550679 tcaattaatggtttgatatccgaaaatcacgagcaca 27550643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 41016914 - 41016950
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  41016914 tcaattaatggtttgatatccgaaaatcacgagcaca 41016950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 43468109 - 43468073
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||||| ||||| |||||||||    
T  43468109 tcaattaatggtttgatattcgaaaattacgagcaca 43468073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 51922096 - 51922060
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  51922096 tcaattaatggtttgatatccgaaaatcacgagcaca 51922060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 170 - 282
Target Start/End: Original strand, 21149584 - 21149696
Alignment:
Q  170 attttcagatcaaacccgtttttcaaagaaatttcctcaagaacattcatcaaatcaaaaatcgagaaagatcacataatgtaattctaattctcttttt 269  Q
    |||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||  |||||||||||    
T  21149584 atttacagatcaaaccattttttcaaagaaatttcctcaagaacattcatcaaatcaaaaatccagaaagatcatataatgtaattccgattctcttttt 21149683  T
Q  270 tcagatctgttca 282  Q
     || |||||||||    
T  21149684 ccaaatctgttca 21149696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 170 - 249
Target Start/End: Original strand, 28479499 - 28479578
Alignment:
Q  170 attttcagatcaaacccgtttttcaaagaaatttcctcaagaacattcatcaaatcaaaaatcgagaaagatcacataat 249  Q
    |||| ||||||||||   ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  28479499 atttacagatcaaacgattttttcaaagaaatttcctcaagaacattcatcaaatcaaaaatccagaaagatcatataat 28479578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 267
Target Start/End: Complemental strand, 31356797 - 31356717
Alignment:
Q  188 tttttcaaagaaatttcctcaagaacattcatcaaatca--aaaatcgagaaagatcacataatgtaattctaattctcttt 267  Q
    ||||| |||||||||||||||||||||| ||||||||||  |||||| |||||||||| |||||||||||| ||| ||||||    
T  31356797 ttttttaaagaaatttcctcaagaacatccatcaaatcaaaaaaatc-agaaagatcatataatgtaattccaatcctcttt 31356717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 280 - 317
Target Start/End: Complemental strand, 19655599 - 19655562
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaa 317  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  19655599 tcaattaatggtttgatatccaaaaatcacgagcacaa 19655562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 280 - 317
Target Start/End: Complemental strand, 41232351 - 41232314
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaa 317  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  41232351 tcaattaatggtttgatatccaaaaatcacgagcacaa 41232314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 34068710 - 34068674
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||||| |||||||||||||||    
T  34068710 tcaattaatggtttgatattcgaaaatcacgagcaca 34068674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 318
Target Start/End: Original strand, 35304918 - 35304956
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaaa 318  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  35304918 tcaattaatggtttgatatccgaaaatcacgagcacaaa 35304956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Complemental strand, 6855993 - 6855956
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaa 317  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  6855993 tcaattaatggtttgatatccgaaaatcacgagcacaa 6855956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Complemental strand, 15943024 - 15942987
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaa 317  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  15943024 tcaattaatggtttgatatccgaaaatcacgagcacaa 15942987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Complemental strand, 17684971 - 17684934
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaa 317  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  17684971 tcaattaatggtttgatatccgaaaatcacgagcacaa 17684934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Complemental strand, 20364565 - 20364528
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaa 317  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  20364565 tcaattaatggtttgatatccgaaaatcacgagcacaa 20364528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Original strand, 20921053 - 20921090
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaa 317  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  20921053 tcaattaatggtttgatatccgaaaatcacgagcacaa 20921090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Complemental strand, 26896564 - 26896527
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaa 317  Q
    |||||||||||||||| || ||||||||||||||||||    
T  26896564 tcaattaatggtttgacatccaaaaatcacgagcacaa 26896527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Complemental strand, 38154035 - 38153998
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaa 317  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  38154035 tcaattaatggtttgatatccgaaaatcacgagcacaa 38153998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Complemental strand, 42564412 - 42564375
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaa 317  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  42564412 tcaattaatggtttgatatccgaaaatcacgagcacaa 42564375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Original strand, 44375377 - 44375414
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaa 317  Q
    ||||||||||||||||||| |||||||| |||||||||    
T  44375377 tcaattaatggtttgatatccaaaaatcgcgagcacaa 44375414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Original strand, 44390958 - 44390995
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaa 317  Q
    ||||||||||||||||||| |||||||| |||||||||    
T  44390958 tcaattaatggtttgatatccaaaaatcgcgagcacaa 44390995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 14630626 - 14630662
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  14630626 tcaattaatggtttgatatccgaaaatcacgagcaca 14630662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 15951534 - 15951498
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  15951534 tcaattaatggtttgatatccgaaaatcacgagcaca 15951498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 25493438 - 25493474
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  25493438 tcaattaatggtttgatatccgaaaatcacgagcaca 25493474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 25496171 - 25496207
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  25496171 tcaattaatggtttgatatccgaaaatcacgagcaca 25496207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 26717536 - 26717500
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  26717536 tcaattaatggtttgatatccgaaaatcacgagcaca 26717500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 26731669 - 26731633
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  26731669 tcaattaatggtttgatatccgaaaatcacgagcaca 26731633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 28481564 - 28481600
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  28481564 tcaattaatggtttgatatccgaaaatcacgagcaca 28481600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 344
Target Start/End: Original strand, 33771061 - 33771089
Alignment:
Q  316 aaaggcttataagaattgtttggtactac 344  Q
    |||||||||||||||||||||||||||||    
T  33771061 aaaggcttataagaattgtttggtactac 33771089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 34527882 - 34527846
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  34527882 tcaattaatggtttgatatccgaaaatcacgagcaca 34527846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 34541856 - 34541820
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  34541856 tcaattaatggtttgatatccgaaaatcacgagcaca 34541820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 35140195 - 35140231
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  35140195 tcaattaatggtttgatatccgaaaatcacgagcaca 35140231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 35148536 - 35148572
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  35148536 tcaattaatggtttgatatccgaaaatcacgagcaca 35148572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 42573036 - 42573000
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  42573036 tcaattaatggtttgatatccgaaaatcacgagcaca 42573000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 170 - 282
Target Start/End: Complemental strand, 21852201 - 21852094
Alignment:
Q  170 attttcagatcaaacccgtttttcaaagaaatttcctcaagaacattcatcaaatcaaaaatcgagaaagatcacataatgtaattctaattctcttttt 269  Q
    |||| ||||||||||   ||||||||||||||||||||||||||||||||||||||||||||  |||||||||     || |||||| ||||||||||||    
T  21852201 atttacagatcaaacgattttttcaaagaaatttcctcaagaacattcatcaaatcaaaaatacagaaagatc-----atataattccaattctcttttt 21852107  T
Q  270 tcagatctgttca 282  Q
     ||||||||||||    
T  21852106 ccagatctgttca 21852094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 170 - 231
Target Start/End: Complemental strand, 21868725 - 21868664
Alignment:
Q  170 attttcagatcaaacccgtttttcaaagaaatttcctcaagaacattcatcaaatcaaaaat 231  Q
    |||| ||||||||||   ||||||||||||||||||||||||||||||||||||||||||||    
T  21868725 atttacagatcaaacgattttttcaaagaaatttcctcaagaacattcatcaaatcaaaaat 21868664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Complemental strand, 21886231 - 21886202
Alignment:
Q  317 aaggcttataagaattgtttggtactacat 346  Q
    ||||||||||||||||||||||||||||||    
T  21886231 aaggcttataagaattgtttggtactacat 21886202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 19226190 - 19226226
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  19226190 tcaattaatggtttgatatccgaaaatcacgagcaca 19226226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 20370614 - 20370578
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  20370614 tcaattaatggtttgatatccgaaaatcacgagcaca 20370578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 20396302 - 20396266
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  20396302 tcaattaatggtttgatatccgaaaatcacgagcaca 20396266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 28845516 - 28845552
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  28845516 tcaattaatggtttgatatccgaaaatcacgagcaca 28845552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 28854126 - 28854162
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  28854126 tcaattaatggtttgatatccgaaaatcacgagcaca 28854162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 29190442 - 29190478
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  29190442 tcaattaatggtttgatatccgaaaatcacgagcaca 29190478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 31413183 - 31413219
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  31413183 tcaattaatggtttgatatccgaaaatcacgagcaca 31413219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 31424089 - 31424125
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  31424089 tcaattaatggtttgatatccgaaaatcacgagcaca 31424125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 33835166 - 33835130
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  33835166 tcaattaatggtttgatatccaaaaatcgcgagcaca 33835130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 36458945 - 36458981
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  36458945 tcaattaatggtttgatatccaaaaatcgcgagcaca 36458981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 170 - 282
Target Start/End: Original strand, 24922854 - 24922961
Alignment:
Q  170 attttcagatcaaacccgtttttcaaagaaatttcctcaagaacattcatcaaatcaaaaatcgagaaagatcacataatgtaattctaattctcttttt 269  Q
    |||| ||||||||||   ||||||||||||||||||||||||||||||||||||||||||||| |||||||||     || |||||| ||||||||||||    
T  24922854 atttacagatcaaacgattttttcaaagaaatttcctcaagaacattcatcaaatcaaaaatccagaaagatc-----atataattccaattctcttttt 24922948  T
Q  270 tcagatctgttca 282  Q
     |||||| |||||    
T  24922949 ccagatcggttca 24922961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 27341548 - 27341512
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| |||||||||||||||||    
T  27341548 tcaattaatggtttgatatccaaaaatcacgagcaca 27341512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 280 - 319
Target Start/End: Original strand, 773517 - 773556
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaaag 319  Q
    ||||||||||||||||||| | ||||||||||||||||||    
T  773517 tcaattaatggtttgatatccgaaaatcacgagcacaaag 773556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Complemental strand, 12425252 - 12425215
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaa 317  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  12425252 tcaattaatggtttgatatccgaaaatcacgagcacaa 12425215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Original strand, 12998899 - 12998936
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaa 317  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  12998899 tcaattaatggtttgatatccgaaaatcacgagcacaa 12998936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Complemental strand, 55584196 - 55584159
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaa 317  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  55584196 tcaattaatggtttgatatccgaaaatcacgagcacaa 55584159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 8092772 - 8092736
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  8092772 tcaattaatggtttgatatccgaaaatcacgagcaca 8092736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 8101577 - 8101541
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  8101577 tcaattaatggtttgatatccgaaaatcacgagcaca 8101541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 20865695 - 20865659
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  20865695 tcaattaatggtttgatatccgaaaatcacgagcaca 20865659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 21530141 - 21530105
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  21530141 tcaattaatggtttgatatccgaaaatcacgagcaca 21530105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 25652485 - 25652449
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  25652485 tcaattaatggtttgatatccgaaaatcacgagcaca 25652449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 26033997 - 26033961
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  26033997 tcaattaatggtttgatatccgaaaatcacgagcaca 26033961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 52298058 - 52298094
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  52298058 tcaattaatggtttgatatccgaaaatcacgagcaca 52298094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 382 - 346
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||||| |||||||||||||||    
T  382 tcaattaatggtttgatattcgaaaatcacgagcaca 346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 51055151 - 51055115
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||||| |||||||||||||||    
T  51055151 tcaattaatggtttgatattcgaaaatcacgagcaca 51055115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 318
Target Start/End: Original strand, 31550096 - 31550134
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaaa 318  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  31550096 tcaattaatggtttgatatccgaaaatcacgagcacaaa 31550134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Original strand, 13461296 - 13461333
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaa 317  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  13461296 tcaattaatggtttgatatccgaaaatcacgagcacaa 13461333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Complemental strand, 13803889 - 13803852
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaa 317  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  13803889 tcaattaatggtttgatatccgaaaatcacgagcacaa 13803852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Complemental strand, 23355449 - 23355412
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaa 317  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  23355449 tcaattaatggtttgatatccgaaaatcacgagcacaa 23355412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Complemental strand, 32135144 - 32135107
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaa 317  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  32135144 tcaattaatggtttgatatccgaaaatcacgagcacaa 32135107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Complemental strand, 41744538 - 41744501
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaa 317  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  41744538 tcaattaatggtttgatatccgaaaatcacgagcacaa 41744501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 13452401 - 13452437
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  13452401 tcaattaatggtttgatatccgaaaatcacgagcaca 13452437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 21055244 - 21055280
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  21055244 tcaattaatggtttgatatccgaaaatcacgagcaca 21055280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 21244907 - 21244871
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  21244907 tcaattaatggtttgatatccaaaaatcgcgagcaca 21244871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 28991142 - 28991106
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  28991142 tcaattaatggtttgatatccgaaaatcacgagcaca 28991106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 31541527 - 31541563
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  31541527 tcaattaatggtttgatatccgaaaatcacgagcaca 31541563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 35097414 - 35097378
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  35097414 tcaattaatggtttgatatccgaaaatcacgagcaca 35097378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 43456413 - 43456449
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  43456413 tcaattaatggtttgatatccgaaaatcacgagcaca 43456449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0431 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Original strand, 4723 - 4760
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaa 317  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  4723 tcaattaatggtttgatatccgaaaatcacgagcacaa 4760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0278 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0278
Description:

Target: scaffold0278; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Original strand, 10746 - 10783
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaa 317  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  10746 tcaattaatggtttgatatccgaaaatcacgagcacaa 10783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Complemental strand, 63974 - 63937
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaa 317  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  63974 tcaattaatggtttgatatccgaaaatcacgagcacaa 63937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 80374 - 80338
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  80374 tcaattaatggtttgatatccgaaaatcacgagcaca 80338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Complemental strand, 1886768 - 1886731
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaa 317  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  1886768 tcaattaatggtttgatatccgaaaatcacgagcacaa 1886731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Complemental strand, 13478104 - 13478067
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaa 317  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  13478104 tcaattaatggtttgatatccgaaaatcacgagcacaa 13478067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Complemental strand, 17739219 - 17739182
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaa 317  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  17739219 tcaattaatggtttgatatccgaaaatcacgagcacaa 17739182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Complemental strand, 24185963 - 24185926
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcacaa 317  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  24185963 tcaattaatggtttgatatccgaaaatcacgagcacaa 24185926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 1900869 - 1900833
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  1900869 tcaattaatggtttgatatccgaaaatcacgagcaca 1900833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 4661725 - 4661689
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  4661725 tcaattaatggtttgatatccgaaaatcacgagcaca 4661689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 5199016 - 5198980
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  5199016 tcaattaatggtttgatatccaaaaatcgcgagcaca 5198980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 5208133 - 5208097
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  5208133 tcaattaatggtttgatatccaaaaatcgcgagcaca 5208097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 10449657 - 10449693
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||||| |||||| ||||||||    
T  10449657 tcaattaatggtttgatattcgaaaatcgcgagcaca 10449693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 13833077 - 13833113
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  13833077 tcaattaatggtttgatatccgaaaatcacgagcaca 13833113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 16225757 - 16225805
Alignment:
Q  29 aaactctattttctagctgtataaataccactacatttattgcagtcag 77  Q
    |||| ||||||| |||  |||||||||||||| ||||||||||||||||    
T  16225757 aaaccctattttatagtggtataaataccactgcatttattgcagtcag 16225805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 18302897 - 18302861
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  18302897 tcaattaatggtttgatatccgaaaatcacgagcaca 18302861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 44075050 - 44075014
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  44075050 tcaattaatggtttgatatccaaaaatcgcgagcaca 44075014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0462 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0462
Description:

Target: scaffold0462; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 13671 - 13635
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  13671 tcaattaatggtttgatatccgaaaatcacgagcaca 13635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0392 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0392
Description:

Target: scaffold0392; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 16431 - 16395
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  16431 tcaattaatggtttgatatccgaaaatcacgagcaca 16395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 10509 - 10545
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  10509 tcaattaatggtttgatatccgaaaatcacgagcaca 10545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 9838 - 9802
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  9838 tcaattaatggtttgatatccgaaaatcacgagcaca 9802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0156 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0156
Description:

Target: scaffold0156; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 29605 - 29569
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  29605 tcaattaatggtttgatatccgaaaatcacgagcaca 29569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 11548 - 11584
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  11548 tcaattaatggtttgatatccgaaaatcacgagcaca 11584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 30250 - 30286
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  30250 tcaattaatggtttgatatccgaaaatcacgagcaca 30286  T

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Target: scaffold0015 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Original strand, 195082 - 195118
Alignment:
Q  280 tcaattaatggtttgatattcaaaaatcacgagcaca 316  Q
    ||||||||||||||||||| | |||||||||||||||    
T  195082 tcaattaatggtttgatatccgaaaatcacgagcaca 195118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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