View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16815_low_42 (Length: 352)

Name: NF16815_low_42
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16815_low_42
NF16815_low_42
[»] chr4 (4 HSPs)
chr4 (15-236)||(6011354-6011575)
chr4 (206-327)||(31699542-31699663)
chr4 (239-327)||(51475227-51475315)
chr4 (242-327)||(37306469-37306554)
[»] chr8 (4 HSPs)
chr8 (205-327)||(30085441-30085563)
chr8 (206-327)||(33440567-33440688)
chr8 (205-262)||(28700549-28700606)
chr8 (205-262)||(16895237-16895294)
[»] chr7 (3 HSPs)
chr7 (203-327)||(17878674-17878798)
chr7 (222-327)||(47821992-47822097)
chr7 (205-333)||(43930018-43930144)
[»] chr6 (2 HSPs)
chr6 (206-312)||(32439473-32439579)
chr6 (205-327)||(7447629-7447750)
[»] chr3 (8 HSPs)
chr3 (215-327)||(13639408-13639520)
chr3 (206-327)||(48543206-48543327)
chr3 (205-320)||(29235643-29235758)
chr3 (234-320)||(46893416-46893502)
chr3 (205-327)||(54186992-54187114)
chr3 (294-328)||(31497765-31497799)
chr3 (205-327)||(42780666-42780788)
chr3 (289-334)||(26223196-26223241)
[»] chr1 (7 HSPs)
chr1 (206-327)||(19078908-19079029)
chr1 (206-327)||(19126796-19126917)
chr1 (206-327)||(24886034-24886155)
chr1 (234-312)||(11709656-11709734)
chr1 (205-327)||(29068074-29068196)
chr1 (205-262)||(52444504-52444561)
chr1 (285-322)||(15275599-15275636)
[»] chr2 (4 HSPs)
chr2 (206-319)||(864171-864282)
chr2 (208-327)||(6951695-6951815)
chr2 (283-319)||(35452313-35452349)
chr2 (242-320)||(37285185-37285263)
[»] chr5 (4 HSPs)
chr5 (242-334)||(18237192-18237284)
chr5 (205-327)||(5990582-5990704)
chr5 (242-327)||(32153756-32153841)
chr5 (230-327)||(41020241-41020338)
[»] scaffold0922 (1 HSPs)
scaffold0922 (253-327)||(709-783)


Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 6011354 - 6011575
Alignment:
Q  15 aatatatcagtgagaggagacttggagattaatgattgctttagcaagtccaaaatctggaatgttaaaataggcataaacatattgttaaactaagaaa 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6011354 aatatatcagtgagaggagacttggagattaatgattgctttagcaagtccaaaatctggaatgttaaaataggcataaacataatgttaaactaagaaa 6011453  T
Q  115 tatttatattacattctaacgcttgtttcacatatctcccatacacaagtataaaaattaattaaggaacttaaaagaagtatatgcattagaggagtgc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6011454 tatttatattacattctaacgcttgtttcacatatctcccatacacaagtataaaaattaattaaggaacttaaaagaagtatatgcattagaggagtgc 6011553  T
Q  215 tatgaagactcactttctaaca 236  Q
    ||||||||||||||||||||||    
T  6011554 tatgaagactcactttctaaca 6011575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 327
Target Start/End: Complemental strand, 31699663 - 31699542
Alignment:
Q  206 gaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctca 305  Q
    |||| |||||||| | |||| ||||||||||| ||||| |||||| |||||||||||  ||||||| || |||  | ||| ||||||||||| || | ||    
T  31699663 gaggggtgctatggacactctctttctaacactctctccaacactcactctcttattgggtgaaattcatgtgggtatcatacattggaaatggacccca 31699564  T
Q  306 cataaagtgatgagatccacat 327  Q
    |||||| || ||||| ||||||    
T  31699563 cataaaatggtgagacccacat 31699542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 239 - 327
Target Start/End: Complemental strand, 51475315 - 51475227
Alignment:
Q  239 ctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctcacataaagtgatgagatccacat 327  Q
    |||||||||||  |||||||||||  ||||||| || |||  |  |||||||||||||| |||| ||||||||||| ||||||||||||    
T  51475315 ctctctaacacccactctcttattgggtgaaatccatgtgggtaccacacattggaaatggatcccacataaagtggtgagatccacat 51475227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 327
Target Start/End: Complemental strand, 37306554 - 37306469
Alignment:
Q  242 tctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctcacataaagtgatgagatccacat 327  Q
    ||||||||| ||| |||||||  ||||||| || |||  |  |||||||||||||| |||||||||||||||| ||||| ||||||    
T  37306554 tctaacactcactttcttattgggtgaaattcatgtgggtaccacacattggaaatggatctcacataaagtggtgagacccacat 37306469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 205 - 327
Target Start/End: Complemental strand, 30085563 - 30085441
Alignment:
Q  205 agaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctc 304  Q
    |||||| || |||| | |||| ||||||||||| |||||||||||||||||||||||| |||||||| || |||| |||||||  |||||||| |||| |    
T  30085563 agaggaatgttatggacactctctttctaacactctctctaacacttactctcttattgagtgaaattcatgtgagtgtcacatgttggaaatggatccc 30085464  T
Q  305 acataaagtgatgagatccacat 327  Q
    |||||||||| ||||||||||||    
T  30085463 acataaagtggtgagatccacat 30085441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 327
Target Start/End: Complemental strand, 33440688 - 33440567
Alignment:
Q  206 gaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctca 305  Q
    |||||||| |||| | |||| |||| |||||| |||||||||| | |||||||||||  ||||||  || |||  |  |||||||||||||| |||| ||    
T  33440688 gaggagtgttatggacactctctttataacactctctctaacattcactctcttattgggtgaaagtcatgtgggtaccacacattggaaatggatccca 33440589  T
Q  306 cataaagtgatgagatccacat 327  Q
    ||||||||| ||||| ||||||    
T  33440588 cataaagtggtgagacccacat 33440567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 262
Target Start/End: Original strand, 28700549 - 28700606
Alignment:
Q  205 agaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttatt 262  Q
    ||||||||| |||| | |||| ||||||||||| |||||||||||| |||||||||||    
T  28700549 agaggagtgttatgtacactctctttctaacactctctctaacactcactctcttatt 28700606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 262
Target Start/End: Original strand, 16895237 - 16895294
Alignment:
Q  205 agaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttatt 262  Q
    |||| ||||||||||| ||||  |||||||||  |||||||||||| |||||||||||    
T  16895237 agagaagtgctatgaacactctttttctaacattctctctaacactcactctcttatt 16895294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 203 - 327
Target Start/End: Original strand, 17878674 - 17878798
Alignment:
Q  203 ttagaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatc 302  Q
    ||||| |||||||||| | |||| ||||||||||| |||| ||||| |||||||||||||  ||||||  || |||  | ||||||||| ||||||||||    
T  17878674 ttagaagagtgctatggacactctctttctaacactctctttaacatttactctcttattgggtgaaagtcatgtgggtatcacacattagaaatagatc 17878773  T
Q  303 tcacataaagtgatgagatccacat 327  Q
     ||||||||||| ||||||| ||||    
T  17878774 ccacataaagtggtgagatcgacat 17878798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 327
Target Start/End: Original strand, 47821992 - 47822097
Alignment:
Q  222 actcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctcacataaagtgatgagat 321  Q
    |||| ||||||| ||| |||||||||||| |||||  ||||  ||||||| || |||  |  |||||||||||||| |||| ||||||||||| ||||||    
T  47821992 actctctttctagcactctctctaacactcactcttatattgggtgaaatccatgtgggtaccacacattggaaatggatcccacataaagtggtgagat 47822091  T
Q  322 ccacat 327  Q
    ||||||    
T  47822092 ccacat 47822097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 333
Target Start/End: Complemental strand, 43930144 - 43930018
Alignment:
Q  205 agaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctc 304  Q
    ||||||||| |||| | |||| ||||||||||| |||||||||||| ||||| |||||  ||||||| || |||  |  ||||||||| |||| |||| |    
T  43930144 agaggagtgttatggacactctctttctaacactctctctaacactcactcttttattgggtgaaattcatgtgggtaccacacattgaaaatggatcac 43930045  T
Q  305 acataaagtgatgagatccacataaattt 333  Q
    | |||||||| ||||| |||||| |||||    
T  43930044 a-ataaagtggtgaga-ccacattaattt 43930018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 206 - 312
Target Start/End: Original strand, 32439473 - 32439579
Alignment:
Q  206 gaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctca 305  Q
    ||||||||||||||| |||| ||||| ||||| |||||||||||| |||||||||||  ||||||| || |||  |  |||||||||||||| |||| ||    
T  32439473 gaggagtgctatgaacactctctttcaaacactctctctaacactcactctcttattgggtgaaattcatgtgggtaccacacattggaaatggatccca 32439572  T
Q  306 cataaag 312  Q
    |||||||    
T  32439573 cataaag 32439579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 327
Target Start/End: Complemental strand, 7447750 - 7447629
Alignment:
Q  205 agaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctc 304  Q
    |||||||||||||  | ||||  |||||||||| |||||||||| | |||||||| ||  ||||||| || |||  |  |||||||| ||||| |||| |    
T  7447750 agaggagtgctattgacactctatttctaacactctctctaaca-tcactctcttgttgggtgaaattcatgtgggtaccacacattagaaatggatccc 7447652  T
Q  305 acataaagtgatgagatccacat 327  Q
    |||||||||| ||||| ||||||    
T  7447651 acataaagtggtgagacccacat 7447629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 215 - 327
Target Start/End: Original strand, 13639408 - 13639520
Alignment:
Q  215 tatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctcacataaagtg 314  Q
    |||||| |||| ||||||||||| |||||||||| | ||||| |||||   |||||| || |||  | ||||||||||||||| ||||||||||||||||    
T  13639408 tatgaacactctctttctaacactctctctaacagtcactcttttattggatgaaattcatgtgggtatcacacattggaaatggatctcacataaagtg 13639507  T
Q  315 atgagatccacat 327  Q
     ||||| ||||||    
T  13639508 gtgagacccacat 13639520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 206 - 327
Target Start/End: Complemental strand, 48543327 - 48543206
Alignment:
Q  206 gaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctca 305  Q
    ||||||||||||||| |||| ||||||||||| ||||| |||||| |||||||||||  ||||||| || |||  |  || ||||||||||| || | ||    
T  48543327 gaggagtgctatgaacactctctttctaacactctctccaacactcactctcttattgggtgaaattcatgtgggtagcatacattggaaatggacccca 48543228  T
Q  306 cataaagtgatgagatccacat 327  Q
    |||||| || ||||| ||||||    
T  48543227 cataaaatggtgagacccacat 48543206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 320
Target Start/End: Original strand, 29235643 - 29235758
Alignment:
Q  205 agaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctc 304  Q
    ||||||||| |||| | |||| ||||||||||| |||||||||||| |||||||||||  ||||||| || | | ||  |||||||| ||||| ||||      
T  29235643 agaggagtgttatggacactctctttctaacactctctctaacactcactctcttattgggtgaaattcatgaggataccacacattagaaatggatcca 29235742  T
Q  305 acataaagtgatgaga 320  Q
    |||||||||| |||||    
T  29235743 acataaagtggtgaga 29235758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 234 - 320
Target Start/End: Complemental strand, 46893502 - 46893416
Alignment:
Q  234 acaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctcacataaagtgatgaga 320  Q
    |||| |||||||||||| ||||||||||||| |||||| || |||  |  |||||||||||||| |||| ||||||||||| |||||    
T  46893502 acactctctctaacactcactctcttattaaatgaaattcatgtgggtaacacacattggaaatggatcccacataaagtggtgaga 46893416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 205 - 327
Target Start/End: Complemental strand, 54187114 - 54186992
Alignment:
Q  205 agaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctc 304  Q
    |||| ||||||||| | |||| ||||||||||| |||||||||||| |||||||||||  ||||| | || |||  |  |||||||| ||||| |||| |    
T  54187114 agagaagtgctatggacactctctttctaacactctctctaacactcactctcttattgggtgaagttcatgtgggtaccacacattagaaatggatccc 54187015  T
Q  305 acataaagtgatgagatccacat 327  Q
    ||||||| || |||||| |||||    
T  54187014 acataaaatggtgagattcacat 54186992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 328
Target Start/End: Original strand, 31497765 - 31497799
Alignment:
Q  294 aaatagatctcacataaagtgatgagatccacata 328  Q
    ||||||||||||||||||||| |||||||||||||    
T  31497765 aaatagatctcacataaagtggtgagatccacata 31497799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 327
Target Start/End: Original strand, 42780666 - 42780788
Alignment:
Q  205 agaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctc 304  Q
    |||||||||||||| | |||  ||||||||||| |||||||||||| | |||||||||   |||||| || ||   | |||||| | | |||| |||| |    
T  42780666 agaggagtgctatggacactatctttctaacactctctctaacactcattctcttattggatgaaatccatgtaggtctcacacttagaaaatggatccc 42780765  T
Q  305 acataaagtgatgagatccacat 327  Q
    |||||||||| ||||| ||||||    
T  42780766 acataaagtggtgagacccacat 42780788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 334
Target Start/End: Complemental strand, 26223241 - 26223196
Alignment:
Q  289 attggaaatagatctcacataaagtgatgagatccacataaatttc 334  Q
    |||| |||| |||| |||||||||||||||||||||||| ||||||    
T  26223241 attgaaaatggatcccacataaagtgatgagatccacatgaatttc 26223196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 206 - 327
Target Start/End: Original strand, 19078908 - 19079029
Alignment:
Q  206 gaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctca 305  Q
    ||||||||||||| | ||||  |||||||||| |||||||||||| |||||||||||  ||||||  || | |  |  |||||||||||||| |||| ||    
T  19078908 gaggagtgctatggacactctgtttctaacactctctctaacactcactctcttattgggtgaaagtcatgcgggtaccacacattggaaatggatccca 19079007  T
Q  306 cataaagtgatgagatccacat 327  Q
    ||||||||| ||||| ||||||    
T  19079008 cataaagtggtgagacccacat 19079029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 206 - 327
Target Start/End: Original strand, 19126796 - 19126917
Alignment:
Q  206 gaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctca 305  Q
    ||||||||||||| | ||||  |||||||||| |||||||||||| |||||||||||  ||||||  || | |  |  |||||||||||||| |||| ||    
T  19126796 gaggagtgctatggacactctgtttctaacactctctctaacactcactctcttattgggtgaaagtcatgcgggtaccacacattggaaatggatccca 19126895  T
Q  306 cataaagtgatgagatccacat 327  Q
    ||||||||| ||||| ||||||    
T  19126896 cataaagtggtgagacccacat 19126917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 206 - 327
Target Start/End: Original strand, 24886034 - 24886155
Alignment:
Q  206 gaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctca 305  Q
    ||||||||||||| | | || ||||||||||| |||||||||||| ||||| |||||  ||||||| || |||  |  ||||||||| ||||||||| ||    
T  24886034 gaggagtgctatggacattctctttctaacactctctctaacactcactcttttattgggtgaaattcatgtgggtaccacacattgtaaatagatccca 24886133  T
Q  306 cataaagtgatgagatccacat 327  Q
    ||||||| | ||||| ||||||    
T  24886134 cataaagcggtgagacccacat 24886155  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 312
Target Start/End: Complemental strand, 11709734 - 11709656
Alignment:
Q  234 acaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctcacataaag 312  Q
    |||| |||||||||||| ||||||||||| |||||||| || |||  |  |||||||||||||| |||| |||||||||    
T  11709734 acactctctctaacactcactctcttattgagtgaaattcatgtgggtaccacacattggaaatggatcccacataaag 11709656  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 327
Target Start/End: Original strand, 29068074 - 29068196
Alignment:
Q  205 agaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctc 304  Q
    ||||||||| |||| | |||| |||||||||||  ||||||||||| ||| | |||||  |||||||||  |||  |  |||||||||||||| |||| |    
T  29068074 agaggagtgttatggacactctctttctaacactttctctaacactcactattttattgggtgaaatacgtgtgggtaccacacattggaaattgatccc 29068173  T
Q  305 acataaagtgatgagatccacat 327  Q
    ||||||| || ||||| ||||||    
T  29068174 acataaaatggtgagacccacat 29068196  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 262
Target Start/End: Complemental strand, 52444561 - 52444504
Alignment:
Q  205 agaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttatt 262  Q
    |||||||||||||| | |||| |||||||||||||||||||||| |  ||||||||||    
T  52444561 agaggagtgctatggacactctctttctaacaccctctctaacattccctctcttatt 52444504  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 322
Target Start/End: Original strand, 15275599 - 15275636
Alignment:
Q  285 acacattggaaatagatctcacataaagtgatgagatc 322  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  15275599 acacattgtaaatagatctcatataaagtgatgagatc 15275636  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 206 - 319
Target Start/End: Complemental strand, 864282 - 864171
Alignment:
Q  206 gaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctca 305  Q
    ||||||||||||||| |||| ||||| |||||  ||||||||||| |||||||||||  ||||||| || |||  |  |||||||| ||||| |||| ||    
T  864282 gaggagtgctatgaacactctctttcaaacac--tctctaacactcactctcttattgggtgaaattcatgtgggtaccacacattagaaatggatccca 864185  T
Q  306 cataaagtgatgag 319  Q
    ||||||| ||||||    
T  864184 cataaagcgatgag 864171  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 327
Target Start/End: Original strand, 6951695 - 6951815
Alignment:
Q  208 ggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaa-tacacgtgaatgtcacacattggaaatagatctcac 306  Q
    |||||| |||| | |||| ||||||||||| || | | ||||| ||||||||||| ||||||| | || |||  || ||||||||| |||| |||| |||    
T  6951695 ggagtgttatgtacactctctttctaacactctttgtgacactaactctcttattgagtgaaaattcatgtgggtgccacacattgaaaatggatcccac 6951794  T
Q  307 ataaagtgatgagatccacat 327  Q
    |||||||| ||||| ||||||    
T  6951795 ataaagtggtgagacccacat 6951815  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 319
Target Start/End: Complemental strand, 35452349 - 35452313
Alignment:
Q  283 tcacacattggaaatagatctcacataaagtgatgag 319  Q
    |||||||||||||||||||| ||||||||||||||||    
T  35452349 tcacacattggaaatagatcccacataaagtgatgag 35452313  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 320
Target Start/End: Complemental strand, 37285263 - 37285185
Alignment:
Q  242 tctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctcacataaagtgatgaga 320  Q
    ||||||||| ||||| |||||  ||||||| || |||  |  |||||||||||||| |||||||| |||||||||||||    
T  37285263 tctaacactcactcttttattgggtgaaattcatgtgggtaccacacattggaaatggatctcacgtaaagtgatgaga 37285185  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 242 - 334
Target Start/End: Complemental strand, 18237284 - 18237192
Alignment:
Q  242 tctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctcacataaagtgatgagatccacataaatttc 334  Q
    ||||||||| ||||| |||||  ||||||| || |||  | |||||||||| ||||||||| ||||||||||| ||||| |||||| ||||||    
T  18237284 tctaacactcactcttttattgggtgaaattcatgtgggtatcacacattgaaaatagatcccacataaagtggtgagacccacatgaatttc 18237192  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 327
Target Start/End: Complemental strand, 5990704 - 5990582
Alignment:
Q  205 agaggagtgctatgaagactcactttctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctc 304  Q
    |||||||||||||| | |||| |||||||||||  |||| |||||| ||||| |||||  ||||||| || |||  |  || ||||||||||| |||| |    
T  5990704 agaggagtgctatggacactctctttctaacactttctccaacactcactcttttattgggtgaaattcatgtgggtaccatacattggaaatggatccc 5990605  T
Q  305 acataaagtgatgagatccacat 327  Q
    ||||||| || ||||| ||||||    
T  5990604 acataaaatggtgagacccacat 5990582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 327
Target Start/End: Complemental strand, 32153841 - 32153756
Alignment:
Q  242 tctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctcacataaagtgatgagatccacat 327  Q
    ||||||||| |||||||||||  ||||||  || ||| ||  ||||| |||||||| |||| ||||||||||| ||||| ||||||    
T  32153841 tctaacactcactctcttattgggtgaaacccatgtggatcccacactttggaaatggatcccacataaagtggtgagacccacat 32153756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 327
Target Start/End: Complemental strand, 41020338 - 41020241
Alignment:
Q  230 tctaacaccctctctaacacttactctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctcacataaagtgatgagatccacat 327  Q
    |||||||| |||||||||||  |||||||||||  |||||||| | |||  |  |||| |||||||||  ||| ||||||||||| ||||| ||||||    
T  41020338 tctaacacactctctaacacccactctcttattgggtgaaatatatgtgggtaccacatattggaaatgaatcccacataaagtggtgagacccacat 41020241  T

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Target: scaffold0922 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 327
Target Start/End: Original strand, 709 - 783
Alignment:
Q  253 ctctcttattaagtgaaatacacgtgaatgtcacacattggaaatagatctcacataaagtgatgagatccacat 327  Q
    |||||||||| |||||||| || ||| ||  ||||||||| |||| |||| ||||||||||| ||||| ||||||    
T  709 ctctcttattgagtgaaattcatgtggataccacacattgaaaatggatcccacataaagtggtgagacccacat 783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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