View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16815_low_44 (Length: 325)
Name: NF16815_low_44
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16815_low_44 |
 | |
|
| [»] scaffold0400 (2 HSPs) |
| | |
|
| [»] scaffold0365 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 315
Target Start/End: Original strand, 15002028 - 15002325
Alignment:
| Q |
19 |
aacattcctgtt-agtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaa |
117 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15002028 |
aacattcctgttgagtttggccaattgaatgttattgaaaaccttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaa |
15002127 |
T |
|
| Q |
118 |
atcacttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatatatctta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15002128 |
atcacttagaaacattgaatctctcacataacaatctctctggtaccattccctaaagctttgttgatatgttaagcttgacaactgttgatatatctta |
15002227 |
T |
|
| Q |
218 |
caaccagttggagggtccgattccaagcattacagctttcaaaagagctccaagtgaagcactgagaaataacaaaggcttgtgtggtaatgtctctg |
315 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
15002228 |
caaccagttggagggtccgactccaaacattacagctttcgaaagagctccaattgaagcactgagaaataacaaaggcttgtgtggtaatgtttctg |
15002325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 315
Target Start/End: Original strand, 15036941 - 15037238
Alignment:
| Q |
19 |
aacattcctgtt-agtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaa |
117 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15036941 |
aacattcctgttgagtttggccaattgaatgttattgaaaaccttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaa |
15037040 |
T |
|
| Q |
118 |
atcacttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatatatctta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15037041 |
atcacttagaaacattgaatctctcacataacaatctctctggtaccattcccttaagctttgttgatatgttaagcttgacaactgttgatatatctta |
15037140 |
T |
|
| Q |
218 |
caaccagttggagggtccgattccaagcattacagctttcaaaagagctccaagtgaagcactgagaaataacaaaggcttgtgtggtaatgtctctg |
315 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
15037141 |
caaccagttggagggtccgattccaaacattacagctttcaaaagagctccaattgaagcattgacaaataacaaaggcttatgtggtaatgtctctg |
15037238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 19 - 315
Target Start/End: Original strand, 15010921 - 15011218
Alignment:
| Q |
19 |
aacattcctgtt-agtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaa |
117 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15010921 |
aacattcctgttgagtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaa |
15011020 |
T |
|
| Q |
118 |
atcacttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatatatctta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15011021 |
atcacttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatatatctta |
15011120 |
T |
|
| Q |
218 |
caaccagttggagggtccgattccaagcattacagctttcaaaagagctccaagtgaagcactgagaaataacaaaggcttgtgtggtaatgtctctg |
315 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
15011121 |
caaccaattggagggtccgattccaaatgttacagctttcaaaagagctccaattgaagcattgacaaataacaaaggcttatgtggtaatgtctctg |
15011218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 315
Target Start/End: Original strand, 15017036 - 15017333
Alignment:
| Q |
19 |
aacattcctgtt-agtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaa |
117 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15017036 |
aacattcctgttgagtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaa |
15017135 |
T |
|
| Q |
118 |
atcacttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatatatctta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
15017136 |
atcacttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatgtatctta |
15017235 |
T |
|
| Q |
218 |
caaccagttggagggtccgattccaagcattacagctttcaaaagagctccaagtgaagcactgagaaataacaaaggcttgtgtggtaatgtctctg |
315 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||| ||||||||||| ||||||| ||| ||||||||| ||||||||||||||| |||||| |
|
|
| T |
15017236 |
caaccagttggagggtccgactccaaacattacagctttcggaagagctccaattgaagcattgacaaataacaagggcttgtgtggtaatatctctg |
15017333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 19 - 315
Target Start/End: Original strand, 15032379 - 15032676
Alignment:
| Q |
19 |
aacattcctgtt-agtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaa |
117 |
Q |
| |
|
|||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
15032379 |
aacattcctgctgagtttgcccaattgaatgttattgaaaatcttgatcttagtgggaattttatgaatggaaccataccatcaatgcttgggcagttaa |
15032478 |
T |
|
| Q |
118 |
atcacttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatatatctta |
217 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15032479 |
atcgcttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatatatctta |
15032578 |
T |
|
| Q |
218 |
caaccagttggagggtccgattccaagcattacagctttcaaaagagctccaagtgaagcactgagaaataacaaaggcttgtgtggtaatgtctctg |
315 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||||| |||||||| ||||||| ||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
15032579 |
caaccagttggagggtccaattccaaacattacagctttcaaaaaagctccaattgaagcattgacaaataacaaaggcttatgtggtaatgtctctg |
15032676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 34 - 315
Target Start/End: Complemental strand, 14522799 - 14522518
Alignment:
| Q |
34 |
ttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaaatcacttagaaacatt |
133 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||| ||||||| | ||||||||||||||||| |||||||||| |||||||||| |||||||||||| |
|
|
| T |
14522799 |
ttggtcaattgaatgttattgaagatcttgatcttagcgggaattttttgaatggaaccataccaacaatgcttggacagttaaatcgcttagaaacatt |
14522700 |
T |
|
| Q |
134 |
gaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatatatcttacaaccagttggagggt |
233 |
Q |
| |
|
||||||||||||||| ||||||| ||||| |||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
14522699 |
gaatctctcacataataatctctatggtaacattcccttaagcttttttgatatgttaagtttgacaactgttgatatatcttacaaccggttggagggt |
14522600 |
T |
|
| Q |
234 |
ccgattccaagcattacagctttcaaaagagctccaagtgaagcactgagaaataacaaaggcttgtgtggtaatgtctctg |
315 |
Q |
| |
|
|| ||||||| ||||||||| ||| ||||||||||| ||||||| | |||||||||||||||||||| ||||||||||||| |
|
|
| T |
14522599 |
ccaattccaaacattacagcattccaaagagctccagttgaagcatttagaaataacaaaggcttgtgcggtaatgtctctg |
14522518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 19 - 309
Target Start/End: Original strand, 14467724 - 14468015
Alignment:
| Q |
19 |
aacattcctgtt-agtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaa |
117 |
Q |
| |
|
||||||||||| ||||||||||||| |||||| ||||| ||||||||||||||| ||||| | |||| |||||||| ||||||||| |||| ||||||| |
|
|
| T |
14467724 |
aacattcctgtcgagtttggccaattaaatgttcttgaagatcttgatcttagtgagaattttttgaacggaaccattccagcaatgtttggacagttaa |
14467823 |
T |
|
| Q |
118 |
atcacttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatatatctta |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||||||||||| || |||| |||||||||||||||||||||||||| |||||||| || |
|
|
| T |
14467824 |
atcacttagaaacattgaatctctcacataataatctttctggtaccattctcttcagctcagttgatatgttaagcttgacaactgtagatatatcgta |
14467923 |
T |
|
| Q |
218 |
caaccagttggagggtccgattccaagcattacagctttcaaaagagctccaagtgaagcactgagaaataacaaaggcttgtgtggtaatg |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||| || ||||||| ||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
14467924 |
caaccagttggagggtccgattccaagcattccagccttccaacaggctccaattgaagcactgagaaacaacaaagacttgtgtggtaatg |
14468015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 15025038 - 15025237
Alignment:
| Q |
19 |
aacattcctgtt-agtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaa |
117 |
Q |
| |
|
|||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
15025038 |
aacattcctgctgagtttgcccaattgaatgttattgaaaatcttgatcttagtgggaattttatgaatggaaccataccatcaatgcttgggcagttaa |
15025137 |
T |
|
| Q |
118 |
atcacttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatatatctta |
217 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15025138 |
atcgcttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatatatctta |
15025237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 19 - 315
Target Start/End: Complemental strand, 14532936 - 14532639
Alignment:
| Q |
19 |
aacattcctgtt-agtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaa |
117 |
Q |
| |
|
|||||||||||| |||||| |||||| || ||||||||| ||||||||||||||| ||| ||||| ||||||||||||| |||||||||| ||||||| |
|
|
| T |
14532936 |
aacattcctgttgagtttgaccaattaaaggttattgaagatcttgatcttagtgaaaatgttatgagtggaaccataccatcaatgcttggacagttaa |
14532837 |
T |
|
| Q |
118 |
atcacttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatatatctta |
217 |
Q |
| |
|
|||||||| ||||||||||||| |||||||| ||||| ||||| |||||||| | |||| | | | |||||||||||||||| |||||||||||| || |
|
|
| T |
14532836 |
atcacttacaaacattgaatctttcacataataatctttctggaaccattcctttgagctacggtaagatgttaagcttgacaattgttgatatatcata |
14532737 |
T |
|
| Q |
218 |
caaccagttggagggtccgattccaagcattacagctttcaaaagagctccaagtgaagcactgagaaataacaaaggcttgtgtggtaatgtctctg |
315 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||| ||| ||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
14532736 |
caaccaattggagggtccaattccaagcattacagccttccaaaaagctccaattgaagcacttagaaataacaaaggcttgtgtggtaatgtctctg |
14532639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 19 - 314
Target Start/End: Original strand, 14481906 - 14482202
Alignment:
| Q |
19 |
aacattcctgtt-agtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaa |
117 |
Q |
| |
|
||||||||||| ||||||||||||| |||||| ||||| ||||||||||||||| ||||| | |||| |||||||| ||||||||| |||| ||||||| |
|
|
| T |
14481906 |
aacattcctgtcgagtttggccaattaaatgttcttgaagatcttgatcttagtgagaattttttgaacggaaccattccagcaatgtttggacagttaa |
14482005 |
T |
|
| Q |
118 |
atcacttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatatatctta |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||||||||||| || | || | | ||||||||||||| |||||| |||||||| || |
|
|
| T |
14482006 |
atcacttagaaacattgaatctctcacataataatctttctggtaccattcccttcagatatggttagatgttaagcttgataactgtagatatatcgta |
14482105 |
T |
|
| Q |
218 |
caaccagttggagggtccgattccaagcattacagctttcaaaagagctccaagtgaagcactgagaaataacaaaggcttgtgtggtaatgtctct |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||| | | | |||||| ||||||||||||||| ||||||| |||||||||||||| |||| |
|
|
| T |
14482106 |
caaccagttggagggtccgattccaagcattccagccttccagaaaactccaattgaagcactgagaaacaacaaagacttgtgtggtaatgcctct |
14482202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 19 - 309
Target Start/End: Original strand, 14503903 - 14504194
Alignment:
| Q |
19 |
aacattcctgtt-agtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaa |
117 |
Q |
| |
|
|||||||| ||| ||||||||| ||| |||||||||||| |||||||||| ||||| |||| |||||||||||| ||||| ||||| |||| ||||| |
|
|
| T |
14503903 |
aacattcccgttgagtttggccgattaaatgttattgaagatcttgatctcagtggaaattttatgaatggaacgataccttcaatgtttggagtgttaa |
14504002 |
T |
|
| Q |
118 |
atcacttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatatatctta |
217 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||| |||||||| || |||| |||| || |||||||||||||||||||| | |||||||||| || |
|
|
| T |
14504003 |
atcatttagaaacattgaatctctcacataataatctgtctggtacgatcccctttagctctggtgatatgttaagcttgacaattattgatatatcata |
14504102 |
T |
|
| Q |
218 |
caaccagttggagggtccgattccaagcattacagctttcaaaagagctccaagtgaagcactgagaaataacaaaggcttgtgtggtaatg |
309 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||| ||| || |||||||| ||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
14504103 |
caaccaattggagggtccgattccaagcattccagccttccaacaagctccaattgaagcactgagaaacaacaaagacttgtgtggtaatg |
14504194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 48 - 315
Target Start/End: Original strand, 15040710 - 15040962
Alignment:
| Q |
48 |
gttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaaatcacttagaaacattgaatctctcacata |
147 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||| ||||||||||||| |
|
|
| T |
15040710 |
gttattgaaaatcttgatcttagtgggaattctttgaatggaaccataccaacaatgcttggacagttaaatcgcttagaaacattg------------- |
15040796 |
T |
|
| Q |
148 |
acaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatatatcttacaaccagttggagggtccgattccaagcat |
247 |
Q |
| |
|
||||| | | |||||||||||| | || || ||| |||| | |||||||||||||||||||||| | |||||| ||| ||||||| ||||||| || |
|
|
| T |
15040797 |
--aatcttttttgtaccattcccttgacctatggtgagatgtcaggcttgacaactgttgatatatcatgcaaccaattgaagggtccaattccaaaaat |
15040894 |
T |
|
| Q |
248 |
tacagctttcaaaagagctccaagtgaagcactgagaaataacaaaggcttgtgtggtaatgtctctg |
315 |
Q |
| |
|
| || | ||| | ||| ||| ||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
15040895 |
ttcatccttcctacaagccccatttgaagcattaagaaataacaaaggcttgtgtggtaatgtctctg |
15040962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 141; Significance: 6e-74; HSPs: 2)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 31 - 315
Target Start/End: Original strand, 12713 - 12997
Alignment:
| Q |
31 |
agtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaaatcacttagaaac |
130 |
Q |
| |
|
||||||||||||| | ||||||||| ||||||| |||||||| |||| | |||| |||||||||||| |||||||||| |||||||||||| || |||| |
|
|
| T |
12713 |
agtttggccaattagaagttattgaagatcttgaccttagtggaaattttttgaacggaaccataccatcaatgcttggacagttaaatcacatacaaac |
12812 |
T |
|
| Q |
131 |
attgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatatatcttacaaccagttggag |
230 |
Q |
| |
|
||||||||| |||||||| ||||| ||||| |||||||| | |||| | | | |||||||||||||||| |||||||||||| |||||||| |||||| |
|
|
| T |
12813 |
attgaatctttcacataataatctttctggaaccattcctttgagctacggtaagatgttaagcttgacaattgttgatatatcatacaaccaattggag |
12912 |
T |
|
| Q |
231 |
ggtccgattccaagcattacagctttcaaaagagctccaagtgaagcactgagaaataacaaaggcttgtgtggtaatgtctctg |
315 |
Q |
| |
|
||||||||||| | |||| |||| ||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12913 |
ggtccgattcctaacattccagccttcctaaaagctccaattgaagcactgagaaataacaaaggcttgtgtggtaatgtctctg |
12997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 31 - 307
Target Start/End: Original strand, 6425 - 6701
Alignment:
| Q |
31 |
agtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaaatcacttagaaac |
130 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||| | |||| | ||||||||||||||||| |||||||||| ||||||||| ||||||||| |
|
|
| T |
6425 |
agtttggacaattgaaaattattgaaaatcttgatcttagcgagaatgttttgaatggaaccataccaacaatgcttggagagttaaatcgcttagaaac |
6524 |
T |
|
| Q |
131 |
attgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatatatcttacaaccagttggag |
230 |
Q |
| |
|
|||||||||||||||||| ||| | |||||||||||||||| | || || ||| |||| |||||| |||||| |||||||||| |||||||| || || |
|
|
| T |
6525 |
attgaatctctcacataataatttttctggtaccattcccttgacctatggtgagatgtcaagcttaacaactattgatatatcatacaaccaatttgaa |
6624 |
T |
|
| Q |
231 |
ggtccgattccaagcattacagctttcaaaagagctccaagtgaagcactgagaaataacaaaggcttgtgtggtaa |
307 |
Q |
| |
|
||||| ||||||| |||| |||| ||||||| ||||||| ||||||| | |||||||||||||||||||||||||| |
|
|
| T |
6625 |
ggtccaattccaaacattccagccttcaaaaatgctccaattgaagcattaagaaataacaaaggcttgtgtggtaa |
6701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 141; Significance: 6e-74; HSPs: 2)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 31 - 315
Target Start/End: Original strand, 13356 - 13640
Alignment:
| Q |
31 |
agtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaaatcacttagaaac |
130 |
Q |
| |
|
||||||||||||| | ||||||||| ||||||| |||||||| |||| | |||| |||||||||||| |||||||||| |||||||||||| || |||| |
|
|
| T |
13356 |
agtttggccaattagaagttattgaagatcttgaccttagtggaaattttttgaacggaaccataccatcaatgcttggacagttaaatcacatacaaac |
13455 |
T |
|
| Q |
131 |
attgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatatatcttacaaccagttggag |
230 |
Q |
| |
|
||||||||| |||||||| ||||| ||||| |||||||| | |||| | | | |||||||||||||||| |||||||||||| |||||||| |||||| |
|
|
| T |
13456 |
attgaatctttcacataataatctttctggaaccattcctttgagctacggtaagatgttaagcttgacaattgttgatatatcatacaaccaattggag |
13555 |
T |
|
| Q |
231 |
ggtccgattccaagcattacagctttcaaaagagctccaagtgaagcactgagaaataacaaaggcttgtgtggtaatgtctctg |
315 |
Q |
| |
|
||||||||||| | |||| |||| ||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13556 |
ggtccgattcctaacattccagccttcctaaaagctccaattgaagcactgagaaataacaaaggcttgtgtggtaatgtctctg |
13640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 31 - 307
Target Start/End: Original strand, 7069 - 7345
Alignment:
| Q |
31 |
agtttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaaatcacttagaaac |
130 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||| | |||| | ||||||||||||||||| |||||||||| ||||||||| ||||||||| |
|
|
| T |
7069 |
agtttggacaattgaaaattattgaaaatcttgatcttagcgagaatgttttgaatggaaccataccaacaatgcttggagagttaaatcgcttagaaac |
7168 |
T |
|
| Q |
131 |
attgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatatatcttacaaccagttggag |
230 |
Q |
| |
|
|||||||||||||||||| ||| | |||||||||||||||| | || || ||| |||| |||||| |||||| |||||||||| |||||||| || || |
|
|
| T |
7169 |
attgaatctctcacataataatttttctggtaccattcccttgacctatggtgagatgtcaagcttaacaactattgatatatcatacaaccaatttgaa |
7268 |
T |
|
| Q |
231 |
ggtccgattccaagcattacagctttcaaaagagctccaagtgaagcactgagaaataacaaaggcttgtgtggtaa |
307 |
Q |
| |
|
||||| ||||||| |||| |||| ||||||| ||||||| ||||||| | |||||||||||||||||||||||||| |
|
|
| T |
7269 |
ggtccaattccaaacattccagccttcaaaaatgctccaattgaagcattaagaaataacaaaggcttgtgtggtaa |
7345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 84 - 315
Target Start/End: Original strand, 16102867 - 16103098
Alignment:
| Q |
84 |
aatggaaccataccagcaatgcttggccagttaaatcacttagaaacattgaatctctcacataacaatctctctggtaccattccctcaagctttgttg |
183 |
Q |
| |
|
|||||||| |||||| |||||||| ||||| || |||| |||||||||||| |||||||||| ||||| ||||| |||||||| ||||||| | |
|
|
| T |
16102867 |
aatggaacaataccatcaatgcttacacagttgaaatacttggaaacattgaatatctcacataataatctttctggctttattccctctagctttgatc |
16102966 |
T |
|
| Q |
184 |
atatgttaagcttgacaactgttgatatatcttacaaccagttggagggtccgattccaagcattacagctttcaaaagagctccaagtgaagcactgag |
283 |
Q |
| |
|
| ||||||||||||||| ||||||||||||| || ||||| ||||||||||| | || | |||| |||||||| || ||| ||| |||| |||| |
|
|
| T |
16102967 |
aaatgttaagcttgacatctgttgatatatcatataaccaattggagggtccactccccaacattcgagctttcagaaacgctacaatcgaagtgttgag |
16103066 |
T |
|
| Q |
284 |
aaataacaaaggcttgtgtggtaatgtctctg |
315 |
Q |
| |
|
|||||| |||| |||||||||||||||||||| |
|
|
| T |
16103067 |
aaataataaagacttgtgtggtaatgtctctg |
16103098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 33 - 315
Target Start/End: Original strand, 14605834 - 14606116
Alignment:
| Q |
33 |
tttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaaatcacttagaaacat |
132 |
Q |
| |
|
||||| ||||| ||||| |||||| || ||||| ||||| |||| | || ||||||| |||||| |||||||| ||||| || |||| ||||||| |
|
|
| T |
14605834 |
tttggacaatttaatgtccttgaaatcctagatctcagtggaaattttttggatggaacaataccatcaatgcttacacagttgaaatacttggaaacat |
14605933 |
T |
|
| Q |
133 |
tgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatatatcttacaaccagttggaggg |
232 |
Q |
| |
|
||||| |||||||||| ||||| |||||| |||||||| ||||| | | | ||||| ||||| ||| ||||||||||||| || ||||| |||||||| |
|
|
| T |
14605934 |
tgaatatctcacataataatctttctggttttattccctctagcttcgatcagatgttcagcttaacatctgttgatatatcatataaccaattggaggg |
14606033 |
T |
|
| Q |
233 |
tccgattccaagcattacagctttcaaaagagctccaagtgaagcactgagaaataacaaaggcttgtgtggtaatgtctctg |
315 |
Q |
| |
|
||| | || | ||| |||||||| | ||| ||| ||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
14606034 |
tccactccccaatattcgagctttcagcaacgctacaattgaagtggtgagaaataataaaggcttgtgtggtaatgtctctg |
14606116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 33 - 315
Target Start/End: Original strand, 16025011 - 16025293
Alignment:
| Q |
33 |
tttggccaattgaatgttattgaaaatcttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaaatcacttagaaacat |
132 |
Q |
| |
|
||||| ||||| ||||| |||||| || ||||| ||||| |||| | || ||||||| |||||| |||||||| ||||| || |||| ||||||| |
|
|
| T |
16025011 |
tttggacaatttaatgtccttgaaatcctagatctcagtggaaattttttggatggaacaataccatcaatgcttacacagttgaaatacttggaaacat |
16025110 |
T |
|
| Q |
133 |
tgaatctctcacataacaatctctctggtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatatatcttacaaccagttggaggg |
232 |
Q |
| |
|
||||| |||||||||| ||||| |||||| |||||||| ||||| | | | ||||| ||||| || ||||||||||||| || ||||| |||||||| |
|
|
| T |
16025111 |
tgaatatctcacataataatctttctggttttattccctctagcttcgatcagatgttcagcttaacgtctgttgatatatcatataaccaattggaggg |
16025210 |
T |
|
| Q |
233 |
tccgattccaagcattacagctttcaaaagagctccaagtgaagcactgagaaataacaaaggcttgtgtggtaatgtctctg |
315 |
Q |
| |
|
||| | || | ||| |||||||| | ||| ||| ||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
16025211 |
tccactccccaatattcgagctttcagcaacgctacaattgaagtggtgagaaataataaaggcttgtgtggtaatgtctctg |
16025293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 235
Target Start/End: Original strand, 16172520 - 16172695
Alignment:
| Q |
60 |
cttgatcttagtgggaattctatgaatggaaccataccagcaatgcttggccagttaaatcacttagaaacattgaatctctcacataacaatctctctg |
159 |
Q |
| |
|
|||||||| ||||| |||| | | |||||||| |||||| |||||||| ||||| || |||| |||||||||||| |||||||||| ||||| |||| |
|
|
| T |
16172520 |
cttgatctgagtggaaattttttaaatggaacaataccatcaatgcttacacagttgaaatacttggaaacattgaatatctcacataataatctttctg |
16172619 |
T |
|
| Q |
160 |
gtaccattccctcaagctttgttgatatgttaagcttgacaactgttgatatatcttacaaccagttggagggtcc |
235 |
Q |
| |
|
| |||||||| ||||| | | | ||||| || || || ||||||||||||| || ||||| ||||| ||||| |
|
|
| T |
16172620 |
gatttattccctctagcttcgatcagatgttcagtttaacgtctgttgatatatcatataaccaattggaaggtcc |
16172695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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