View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16815_low_47 (Length: 307)
Name: NF16815_low_47
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16815_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 23 - 254
Target Start/End: Original strand, 2151879 - 2152119
Alignment:
| Q |
23 |
tcttgtcacaaattggagctgtgctttttgttgagtgaaaaagcaagatcaatatgggaaatgagaaataaattttcaaggtagccattagatatgagag |
122 |
Q |
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| T |
2151879 |
tcttgtcacacattggagctgtgctttttgttgagtgaaaaagcaagatcaatatgggaaatgagaaataaattttcaaggtagccattagatatgagag |
2151978 |
T |
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| Q |
123 |
tggtg---------tgaatcactaaattgaaatattgattgtcaactatgtgagataaaacaaaatctttgtgtaaagcaatgcctactctaatcatagt |
213 |
Q |
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| T |
2151979 |
tggtgcttgaggtgtgaatcactaaattgaaatattgattgtcaactatgtgagataaaacaaaatctttgtgtaaagcaatgcctactctaatcatagt |
2152078 |
T |
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| Q |
214 |
gttactcgtccctaatgtgttaatttggattttttatatat |
254 |
Q |
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| T |
2152079 |
gttactcgtccctaatgtgttaatttggattatatatatat |
2152119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 119
Target Start/End: Original strand, 2142340 - 2142429
Alignment:
| Q |
30 |
acaaattggagctgtgctttttgttgagtgaaaaagcaagatcaatatgggaaatgagaaataaattttcaaggtagccattagatatga |
119 |
Q |
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| T |
2142340 |
acaaattggagctctgcttcttgttgagtgaaaaagcaagaggactatggaaaatatgaaagaaattttcatggtagccattagatatga |
2142429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 123
Target Start/End: Original strand, 2146513 - 2146599
Alignment:
| Q |
37 |
ggagctgtgctttttgttgagtgaaaaagcaagatcaatatgggaaatgagaaataaattttcaaggtagccattagatatgagagt |
123 |
Q |
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| T |
2146513 |
ggagttgtgctttttgttgagtgaaaaagcaagagaactatggaaaatatgaatgaaattctcaaggtagccattagtaatgagagt |
2146599 |
T |
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