View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16815_low_48 (Length: 305)
Name: NF16815_low_48
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16815_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 35127450 - 35127737
Alignment:
| Q |
1 |
atactctgattactagtactagtcaacactggtatgaacctaataccaataatggtagcaaagtgaactatgtgttcaagaagggactcaatatgggaaa |
100 |
Q |
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| T |
35127450 |
atactatgattactagtactagtcaacactggtttgaacctaataccaataatggtagcaaagtgaactatgtgttcaagaagggactcaatatgggaaa |
35127549 |
T |
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| Q |
101 |
gaagatattagtttttggttttgtagccacttctgttcctattattcttccaggttttgtagttgcttctgctattggtcttgtagtttccatgccttgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35127550 |
gaagatattagtttttggttttgtagccacttctgttcctattgttcttccaggttttgtagttgcttctgctattggtcttgtagtttccatgccttgt |
35127649 |
T |
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| Q |
201 |
gctttgttcttagttagccatagttgtactcagaatttaatgagtaagttgctccctcagcctagtcctacttatcaaggacagggtc |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35127650 |
gctttgttcttagttagccatagttgtactcagaatttaatgagtaagttgctccctcagcctagtcctacttatcaaggacagggtc |
35127737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 99 - 288
Target Start/End: Complemental strand, 26779344 - 26779155
Alignment:
| Q |
99 |
aagaagatattagtttttggttttgtagccacttctgttcctattattcttccaggttttgtagttgcttctgctattggtcttgtagtttccatgcctt |
198 |
Q |
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||||||| |||||| ||||||||| ||| ||||||| ||| || ||||| |||||||||||||||||||||||| ||| |||| |||||| || ||| |
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| T |
26779344 |
aagaagaaattagtggttggttttgaagcaacttctgcccctcttgttctttcaggttttgtagttgcttctgctaatggccttgcagtttctctgtctt |
26779245 |
T |
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| Q |
199 |
gtgctttgttcttagttagccatagttgtactcagaatttaatgagtaagttgctccctcagcctagtcctacttatcaaggacagggtc |
288 |
Q |
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|||||| ||||| ||| || | | ||||| |||||| |||||||||||| ||| ||||||| |||||| ||| |||||||||| |
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| T |
26779244 |
atgctttcttcttggttttccgttcatacactcatgatttaacgagtaagttgctgcctaagcctaggcctactcctcagggacagggtc |
26779155 |
T |
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