View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16815_low_49 (Length: 304)

Name: NF16815_low_49
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16815_low_49
NF16815_low_49
[»] chr1 (1 HSPs)
chr1 (1-289)||(26829945-26830237)


Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 26829945 - 26830237
Alignment:
Q  1 gacaagtaaatggagtgacctgcaaaacaagtttattgtaat----caatcaaactctatgaataatataagctatacttttgtttgtgaaattcgatcg 96  Q
    |||||||||||||| |||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26829945 gacaagtaaatggaatgacctgcaaaacaagtttattgtaattaatcaatcaaactctatgaataatataagctatacttttgtttgtgaaattcgatcg 26830044  T
Q  97 ttagagcatctcccatgaaaatgtttattactaggatcggccggacatacttgtaggcctaaagcaaatgttaacgtgtgaccttatataaattcaaacc 196  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26830045 ttagagcatctcccatgaaactgtttattactaggatcggccggacatatttgtaggcctaaagcaaatgttaacgtgtgaccttatataaattctaacc 26830144  T
Q  197 aatttaaccttacaatgtaaataaggaagaagaaaaagcattgaaagaagaatatgaagcttcatggattcacactcacaatctttaactaaa 289  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26830145 aaattaaccttacaatgtaaataaggaagaagaaaaagcattgaaagaagaatatgaagcttcatggattcacactcacaatctttaactaaa 26830237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University