View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16815_low_59 (Length: 273)
Name: NF16815_low_59
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16815_low_59 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 19 - 260
Target Start/End: Complemental strand, 28936618 - 28936377
Alignment:
| Q |
19 |
caaacacagaaaattgacccccaacacataactgaatgaacccaaattacatcaagattaacggaaaacgtgacaaatttgcaaagtcgcatggcattta |
118 |
Q |
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| T |
28936618 |
caaacacagaaaattgacccccaacacataactgaatggacccaaattacatcaagattaacggaaaacgtgacaaatttgcaaagtcgcatggcattta |
28936519 |
T |
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| Q |
119 |
aaatattttgacaatttagaattacaaattctgattttgattatgcgagatcacacacaaaagacgacactttcacactgtaaaattgccaatagtgaaa |
218 |
Q |
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| T |
28936518 |
aaatattttgacaatttagaattacaaattctgattttgattatgcgagatcacacacaaaagacgacactttcacactgtaaaattgccaatagtgaaa |
28936419 |
T |
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| Q |
219 |
aacacagcatttaccttgcctccttctgtaatttccccattc |
260 |
Q |
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| T |
28936418 |
aacacagcatttaccttgcctccttctgtaatttccccattc |
28936377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 10189742 - 10189698
Alignment:
| Q |
216 |
aaaaacacagcatttaccttgcctccttctgtaatttccccattc |
260 |
Q |
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| T |
10189742 |
aaaaatacagcatttaccttgcctccttctgtaatttccccattc |
10189698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 10189937 - 10189888
Alignment:
| Q |
46 |
ataactgaatgaacccaaattacatcaagattaacggaaaacgtgacaaa |
95 |
Q |
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| T |
10189937 |
ataactgaatggacccaaattatatcaagaataacggaaaaaatgacaaa |
10189888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 35118021 - 35118065
Alignment:
| Q |
216 |
aaaaacacagcatttaccttgcctccttctgtaatttccccattc |
260 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
35118021 |
aaaaatacagcatttaccttgcctccttctgtaatttccccattc |
35118065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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