View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16815_low_6 (Length: 665)

Name: NF16815_low_6
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16815_low_6
NF16815_low_6
[»] chr1 (4 HSPs)
chr1 (9-479)||(1390281-1390725)
chr1 (547-642)||(1390128-1390223)
chr1 (271-367)||(21859717-21859813)
chr1 (272-367)||(22916284-22916379)
[»] chr6 (3 HSPs)
chr6 (204-367)||(33596362-33596524)
chr6 (271-367)||(14958902-14958998)
chr6 (270-368)||(8877825-8877922)
[»] chr7 (1 HSPs)
chr7 (271-367)||(48629425-48629521)
[»] scaffold0186 (1 HSPs)
scaffold0186 (270-368)||(2723-2821)
[»] chr4 (3 HSPs)
chr4 (272-358)||(4103226-4103312)
chr4 (34-98)||(52477314-52477378)
chr4 (46-108)||(2302234-2302296)
[»] chr3 (2 HSPs)
chr3 (272-368)||(27437912-27438010)
chr3 (270-368)||(9775128-9775225)
[»] chr2 (1 HSPs)
chr2 (288-367)||(27513752-27513831)
[»] chr8 (2 HSPs)
chr8 (288-367)||(15327849-15327928)
chr8 (288-367)||(15508218-15508297)
[»] scaffold0131 (1 HSPs)
scaffold0131 (276-345)||(10296-10365)
[»] scaffold0003 (1 HSPs)
scaffold0003 (276-364)||(111003-111091)


Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 9 - 479
Target Start/End: Complemental strand, 1390725 - 1390281
Alignment:
Q  9 gagtgagaagaatctgaatcaagaagagtgtgtaggttaggttgggagtgtgagagcgagtgtgtgtgaaggcataacgaggaagaggaacgagtgagga 108  Q
    ||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1390725 gagtgagaagaatctgaatcaaga---gtgtgtaggttaggttgggagtgtgagagcgagtgtgtgtgaaggcataacgaggaagaggaacgagtgagga 1390629  T
Q  109 tggagtgtggtgggtgagtttgtgaagtttgagtttgagatttggggggtttttgggggaaagtaagaaagcggggaaatgaaattttgggtagagagcg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1390628 tggagtgtggtgggtgagtttgtgaagtttgagtttgagatttgggggg-ttttgggggaaagtaagaaagcggggaaatgaaattttggatagagagcg 1390530  T
Q  209 taaatgaaattggaacgcgccttttaattcatttaacaaagaaaagttgcgacaattgctccaaacagtcgcaacaaccgttgcaaatgtgcattttgag 308  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||                      ||||||||||||||    
T  1390529 taaatgaaattgcaacgcgccttttaattcatttaacaaagaaaagctgcgacagttgctccaa----------------------atgtgcattttgag 1390452  T
Q  309 gcaattataaggtaagggtcgcagatgaagtgtcgcaatttgcagtttttcttgtagtgagttttgagataaaggtgttgaatcatctgaaggctgcccc 408  Q
    ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1390451 gcagttataagttaagggtcgcagatgaagtgtcgcaatttgcagtttttcttgtagtgagttttgagataaaggtgttgaatcatctgaaggctgcccc 1390352  T
Q  409 ttctcagttgcaccctttgagtttggttttggtaaaggtattgcatttggtctctctaaatgcatatttac 479  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1390351 ttctcagttgcaccctttgagtttggttttggtaaaggtattgcatttggtctctctaaatgcatatttac 1390281  T

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Target: chr1; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 547 - 642
Target Start/End: Complemental strand, 1390223 - 1390128
Alignment:
Q  547 cctctagtacttcttcatcttcattttgtgataactctacagaagatagacactttgataaactgttcgtaaatttgaacatagagaagtcagctg 642  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1390223 cctctagtacttcttcatcttcattttgtgataactctacagaagatagacactttgataaactgttcgtaaatttgaacatagagaagtcagctg 1390128  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 271 - 367
Target Start/End: Original strand, 21859717 - 21859813
Alignment:
Q  271 aaacagtcgcaacaaccgttgcaaatgtgcattttgaggcaattataaggtaagggtcgcagatgaagtgtcgcaatttgcagtttttcttgtagtg 367  Q
    |||||| ||||||||| ||||||||  |||||||||||||| || |||| ||||| ||||||||||||||||||||  |||||||||||||||||||    
T  21859717 aaacagccgcaacaactgttgcaaaaatgcattttgaggcagttgtaagttaaggttcgcagatgaagtgtcgcaaaatgcagtttttcttgtagtg 21859813  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 272 - 367
Target Start/End: Complemental strand, 22916379 - 22916284
Alignment:
Q  272 aacagtcgcaacaaccgttgcaaatgtgcattttgaggcaattataaggtaagggtcgcagatgaagtgtcgcaatttgcagtttttcttgtagtg 367  Q
    ||||||||||||||||||| ||||  |||| |||||| || |||||||||| ||||||| ||||| ||||||||| |||  | |||||||||||||    
T  22916379 aacagtcgcaacaaccgtttcaaaaatgcactttgagacagttataaggtaggggtcgctgatgaggtgtcgcaaattgatgattttcttgtagtg 22916284  T

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Target: chr6 (Bit Score: 96; Significance: 1e-46; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 204 - 367
Target Start/End: Original strand, 33596362 - 33596524
Alignment:
Q  204 gagcgtaaatgaaattggaacgcgccttttaattcatttaacaaagaaaagttgcgacaattgctccaaacagtcgcaacaaccgttgcaaatgtgcatt 303  Q
    ||||||||||||||||  || ||||||||||| ||||| ||||||||||| |||||||| |||  ||||||||| |||||||||||||||||||| ||||    
T  33596362 gagcgtaaatgaaattacaaagcgccttttaagtcatt-aacaaagaaaacttgcgacagttgacccaaacagttgcaacaaccgttgcaaatgttcatt 33596460  T
Q  304 ttgaggcaattataaggtaagggtcgcagatgaagtgtcgcaatttgcagtttttcttgtagtg 367  Q
    |||||||| |||||||||| ||||||||||||||||||| |||||||| | |||||||||||||    
T  33596461 ttgaggcagttataaggtaggggtcgcagatgaagtgtcacaatttgctgattttcttgtagtg 33596524  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 271 - 367
Target Start/End: Complemental strand, 14958998 - 14958902
Alignment:
Q  271 aaacagtcgcaacaaccgttgcaaatgtgcattttgaggcaattataaggtaagggtcgcagatgaagtgtcgcaatttgcagtttttcttgtagtg 367  Q
    |||||| ||||||||||||||||||  |||||||||||||| || |||| ||||||||||||||||||||||||||  |||||||||||||||||||    
T  14958998 aaacagccgcaacaaccgttgcaaaaatgcattttgaggcagttgtaagttaagggtcgcagatgaagtgtcgcaaaatgcagtttttcttgtagtg 14958902  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 270 - 368
Target Start/End: Complemental strand, 8877922 - 8877825
Alignment:
Q  270 caaacagtcgcaacaaccgttgcaaatgtgcattttgaggcaattataaggtaagggtcgcagatgaagtgtcgcaatttgcagtttttcttgtagtga 368  Q
    ||||||| ||||||||| ||||||||  ||||||| |||||| ||  |||| | |||||||||||||||||||||||||| |   ||||||||||||||    
T  8877922 caaacagccgcaacaactgttgcaaaaatgcattt-gaggcagttgcaaggcatgggtcgcagatgaagtgtcgcaatttccttattttcttgtagtga 8877825  T

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Target: chr7 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 271 - 367
Target Start/End: Complemental strand, 48629521 - 48629425
Alignment:
Q  271 aaacagtcgcaacaaccgttgcaaatgtgcattttgaggcaattataaggtaagggtcgcagatgaagtgtcgcaatttgcagtttttcttgtagtg 367  Q
    |||||| ||||||||| ||||||||  |||||||||||||| || |||| ||||||||||||||||||||||||||  |||||||||||||||||||    
T  48629521 aaacagccgcaacaactgttgcaaaaatgcattttgaggcagttgtaagttaagggtcgcagatgaagtgtcgcaaaatgcagtttttcttgtagtg 48629425  T

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Target: scaffold0186 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 270 - 368
Target Start/End: Original strand, 2723 - 2821
Alignment:
Q  270 caaacagtcgcaacaaccgttgcaaatgtgcattttgaggcaattataaggtaagggtcgcagatgaagtgtcgcaatttgcagtttttcttgtagtga 368  Q
    ||||||| ||||||||| ||||||||  |||||||||||||  || |||| ||||||||||||||||||||||||||  ||||||||||||||||||||    
T  2723 caaacagccgcaacaactgttgcaaaaatgcattttgaggcggttgtaagttaagggtcgcagatgaagtgtcgcaaaatgcagtttttcttgtagtga 2821  T

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Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 272 - 358
Target Start/End: Complemental strand, 4103312 - 4103226
Alignment:
Q  272 aacagtcgcaacaaccgttgcaaatgtgcattttgaggcaattataaggtaagggtcgcagatgaagtgtcgcaatttgcagttttt 358  Q
    ||||| ||||||||| ||||||||  |||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  4103312 aacagccgcaacaactgttgcaaaaatgcactttgaggcagttgtaaggtaagggtcgcagatgaagtgtcgcaatttgcagttttt 4103226  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 34 - 98
Target Start/End: Original strand, 52477314 - 52477378
Alignment:
Q  34 gagtgtgtaggttaggttgggagtgtgagagcgagtgtgtgtgaaggcataacgaggaagaggaa 98  Q
    ||||||||||| ||||||||||||||||||||||| | |||||||| |||||||||||| |||||    
T  52477314 gagtgtgtaggctaggttgggagtgtgagagcgagagcgtgtgaagccataacgaggaaaaggaa 52477378  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 2302234 - 2302296
Alignment:
Q  46 taggttgggagtgtgagagcgagtgtgtgtgaaggcataacgaggaagaggaacgagtgagga 108  Q
    |||||||||||||||||||||| ||||  ||||||||||| |||||||| ||| |||||||||    
T  2302234 taggttgggagtgtgagagcgactgtgattgaaggcataatgaggaagaagaaggagtgagga 2302296  T

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Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 272 - 368
Target Start/End: Complemental strand, 27438010 - 27437912
Alignment:
Q  272 aacagtcgcaacaaccgttgcaaatgtgcattttgaggcaattataaggtaagggtcgcagatgaagtgtcgcaatttgca--gtttttcttgtagtga 368  Q
    ||||| ||||||||| ||||||||  |||| ||||||||| ||  ||||||||| ||||||||||||||||||||||||||  ||||||||||||||||    
T  27438010 aacagccgcaacaactgttgcaaaaatgcactttgaggcagttgcaaggtaaggatcgcagatgaagtgtcgcaatttgcagtgtttttcttgtagtga 27437912  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 270 - 368
Target Start/End: Complemental strand, 9775225 - 9775128
Alignment:
Q  270 caaacagtcgcaacaaccgttgcaaatgtgcattttgaggcaattataaggtaagggtcgcagatgaagtgtcgcaatttgcagtttttcttgtagtga 368  Q
    ||||||| |||||||||  |||||||  |||||||||||||  || |||| ||||||||||||||||||||||||||  ||||| ||||||||||||||    
T  9775225 caaacagccgcaacaactattgcaaaaatgcattttgaggcggttgtaagttaagggtcgcagatgaagtgtcgcaaaatgcag-ttttcttgtagtga 9775128  T

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Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 288 - 367
Target Start/End: Original strand, 27513752 - 27513831
Alignment:
Q  288 gttgcaaatgtgcattttgaggcaattataaggtaagggtcgcagatgaagtgtcgcaatttgcagtttttcttgtagtg 367  Q
    ||||||||  |||| ||||||||| ||  || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27513752 gttgcaaaaatgcactttgaggcagttgcaaagtaagggtcgcagatgaagtgtcgcaatttgcagtttttcttgtagtg 27513831  T

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Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 288 - 367
Target Start/End: Complemental strand, 15327928 - 15327849
Alignment:
Q  288 gttgcaaatgtgcattttgaggcaattataaggtaagggtcgcagatgaagtgtcgcaatttgcagtttttcttgtagtg 367  Q
    ||||||||  |||| ||||||||| ||  || ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  15327928 gttgcaaaaatgcactttgaggcagttgcaaagtaagggtcgcagatgaagtgtcacaatttgcagtttttcttgtagtg 15327849  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 288 - 367
Target Start/End: Complemental strand, 15508297 - 15508218
Alignment:
Q  288 gttgcaaatgtgcattttgaggcaattataaggtaagggtcgcagatgaagtgtcgcaatttgcagtttttcttgtagtg 367  Q
    ||||||||  |||| ||||||||| ||  || ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  15508297 gttgcaaaaatgcactttgaggcagttgcaaagtaagggtcgcagatgaagtgtcacaatttgcagtttttcttgtagtg 15508218  T

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Target: scaffold0131 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 276 - 345
Target Start/End: Complemental strand, 10365 - 10296
Alignment:
Q  276 gtcgcaacaaccgttgcaaatgtgcattttgaggcaattataaggtaagggtcgcagatgaagtgtcgca 345  Q
    |||||| |||| ||||||||  ||||  |||||||| ||||||||||||||||||| |||||||||||||    
T  10365 gtcgcagcaactgttgcaaagttgcacattgaggcagttataaggtaagggtcgcaaatgaagtgtcgca 10296  T

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Target: scaffold0003 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 276 - 364
Target Start/End: Complemental strand, 111091 - 111003
Alignment:
Q  276 gtcgcaacaaccgttgcaaatgtgcattttgaggcaattataaggtaagggtcgcagatgaagtgtcgcaatttgcagtttttcttgta 364  Q
    ||||||||||| ||||| ||| ||||  |||||||| |||||||||||||||||||  || ||||||||||  ||| | ||||||||||    
T  111091 gtcgcaacaactgttgcgaatatgcacattgaggcagttataaggtaagggtcgcaattgcagtgtcgcaaaatgctgattttcttgta 111003  T

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