View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16815_low_60 (Length: 273)
Name: NF16815_low_60
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16815_low_60 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 50 - 255
Target Start/End: Complemental strand, 11028094 - 11027889
Alignment:
| Q |
50 |
aatgcaaatgttaataattaattgttagattaaataaagtggttcttattttattttttgggttcaatggaaataacttgttttactgccatccatgcca |
149 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11028094 |
aatgcaaatgttaatagttaattgttagattaaataaagtggttcttattttattttttgggttcaatggaaataacttgttttactgccatccatgcca |
11027995 |
T |
|
| Q |
150 |
gttataattttagaaagtaccagatatatgatgagtccaatgatgactggctgtgaatgaaacccaaaactttgaaacagatctgtcgagtttctcgcaa |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11027994 |
gttataattttagaaagtaccagatatatgatgagtccaatgatgactggctgtgaatgaaacccaaaactttgaaacagatctgtcgagtttctcgcaa |
11027895 |
T |
|
| Q |
250 |
gagtaa |
255 |
Q |
| |
|
|||||| |
|
|
| T |
11027894 |
gagtaa |
11027889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 232
Target Start/End: Original strand, 29809186 - 29809265
Alignment:
| Q |
153 |
ataattttagaaagtaccagatatatgatgagtccaatgatgactggctgtgaatgaaacccaaaactttgaaacagatc |
232 |
Q |
| |
|
|||||||| |||| ||| || ||| |||||||||||||| ||||||||||| || ||||||||||||||| |||||||| |
|
|
| T |
29809186 |
ataatttttaaaagcacctgaaataggatgagtccaatgaggactggctgtgtatcaaacccaaaactttggaacagatc |
29809265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 232
Target Start/End: Complemental strand, 24835450 - 24835397
Alignment:
| Q |
179 |
gatgagtccaatgatgactggctgtgaatgaaacccaaaactttgaaacagatc |
232 |
Q |
| |
|
|||||||||||||| ||||||||||| || ||||||||||| ||| |||||||| |
|
|
| T |
24835450 |
gatgagtccaatgaggactggctgtgtatcaaacccaaaacattggaacagatc |
24835397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University