View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16815_low_65 (Length: 267)

Name: NF16815_low_65
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16815_low_65
NF16815_low_65
[»] chr4 (3 HSPs)
chr4 (10-219)||(32186675-32186884)
chr4 (234-267)||(9143556-9143589)
chr4 (172-219)||(54164674-54164722)
[»] chr6 (4 HSPs)
chr6 (169-219)||(30519678-30519728)
chr6 (172-219)||(12290177-12290224)
chr6 (19-60)||(14752824-14752865)
chr6 (172-219)||(12289980-12290028)
[»] chr7 (6 HSPs)
chr7 (172-219)||(3555365-3555413)
chr7 (173-219)||(20164620-20164667)
chr7 (170-219)||(12821177-12821227)
chr7 (170-219)||(8129877-8129926)
chr7 (171-219)||(29635234-29635283)
chr7 (175-219)||(31198302-31198346)
[»] chr5 (4 HSPs)
chr5 (172-219)||(29673291-29673339)
chr5 (172-219)||(2846959-2847006)
chr5 (172-219)||(2858796-2858843)
chr5 (170-219)||(2846571-2846621)
[»] chr3 (3 HSPs)
chr3 (173-219)||(30430271-30430318)
chr3 (234-267)||(17053526-17053559)
chr3 (172-219)||(30172071-30172119)
[»] scaffold0643 (1 HSPs)
scaffold0643 (234-267)||(6633-6666)
[»] scaffold0408 (1 HSPs)
scaffold0408 (19-60)||(1200-1241)
[»] chr2 (3 HSPs)
chr2 (234-267)||(30015416-30015449)
chr2 (234-267)||(30074513-30074546)
chr2 (172-219)||(18509497-18509545)
[»] chr8 (1 HSPs)
chr8 (172-219)||(31212492-31212540)
[»] chr1 (1 HSPs)
chr1 (172-219)||(14760081-14760129)


Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 10 - 219
Target Start/End: Complemental strand, 32186884 - 32186675
Alignment:
Q  10 attattctcttgcatttgataaacttggcttaatgcatgagatacacttggttaatttatttgattgcatgaataacacttgacttattgcatgtaatta 109  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32186884 attattatcttgcatttgataaacttggcttaatgcatgagatacacttgattaatttatttgattgcatgaataacacttgacttattgcatgtaatta 32186785  T
Q  110 tattgacatttgacttgttgcatttaatttccttagtcttccttctcctttaactaagagttgggttaaataagaaaatggtcccctagatataccaaca 209  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  32186784 tattgacatttgactagttgcatttaatttccttagtcttccttctcctttaactaagagttgggttaaataagaaaatggtcccttaaatataccaaca 32186685  T
Q  210 tttgatttta 219  Q
    ||| ||||||    
T  32186684 tttaatttta 32186675  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 267
Target Start/End: Complemental strand, 9143589 - 9143556
Alignment:
Q  234 cggctattggccacactacaattgccacgatttt 267  Q
    |||||||||||||||||| |||||||||||||||    
T  9143589 cggctattggccacactaaaattgccacgatttt 9143556  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 54164722 - 54164674
Alignment:
Q  172 gggttaaataagaaaatggtc-ccctagatataccaacatttgatttta 219  Q
    |||||||||||| |||| ||| ||||| |||||||||||||||||||||    
T  54164722 gggttaaataagtaaatagtctccctaaatataccaacatttgatttta 54164674  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 169 - 219
Target Start/End: Original strand, 30519678 - 30519728
Alignment:
Q  169 gttgggttaaataagaaaatggtcccctagatataccaacatttgatttta 219  Q
    ||||||||||||||| ||||||||  ||| |||||||||||||||||||||    
T  30519678 gttgggttaaataagtaaatggtcgtctaaatataccaacatttgatttta 30519728  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 12290224 - 12290177
Alignment:
Q  172 gggttaaataagaaaatggtcccctagatataccaacatttgatttta 219  Q
    |||||||||||| ||||| ||||||| |||||||||||||| ||||||    
T  12290224 gggttaaataagtaaatgatcccctaaatataccaacatttaatttta 12290177  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 14752824 - 14752865
Alignment:
Q  19 ttgcatttgataaacttggcttaatgcatgagatacacttgg 60  Q
    |||||| ||||| |||||||||| ||||||||||||||||||    
T  14752824 ttgcatgtgatatacttggcttattgcatgagatacacttgg 14752865  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 12289980 - 12290028
Alignment:
Q  172 gggttaaataagaaaatggtc-ccctagatataccaacatttgatttta 219  Q
    |||||||||||| |||| ||| ||||| |||||||||||||||||||||    
T  12289980 gggttaaataagtaaatagtctccctaaatataccaacatttgatttta 12290028  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 3555365 - 3555413
Alignment:
Q  172 gggttaaataagaaaatggtcccc-tagatataccaacatttgatttta 219  Q
    |||||||||||| ||||||||||| || |||||||||||||||||||||    
T  3555365 gggttaaataagcaaatggtccccctaaatataccaacatttgatttta 3555413  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 20164620 - 20164667
Alignment:
Q  173 ggttaaataagaaaatggtcccct-agatataccaacatttgatttta 219  Q
    ||||||||||| |||||||||||| | |||||||||||||||||||||    
T  20164620 ggttaaataagtaaatggtcccctaaaatataccaacatttgatttta 20164667  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 12821177 - 12821227
Alignment:
Q  170 ttgggttaaataagaaaatggtcccc-tagatataccaacatttgatttta 219  Q
    |||||||||||||| ||||||||||| || |||||||||| ||||||||||    
T  12821177 ttgggttaaataagtaaatggtccccttaaatataccaacgtttgatttta 12821227  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 8129877 - 8129926
Alignment:
Q  170 ttgggttaaataagaaaatggtcccctagatataccaacatttgatttta 219  Q
    |||||||||||||| ||||| || |||| || ||||||||||||||||||    
T  8129877 ttgggttaaataagtaaatgatctcctaaatctaccaacatttgatttta 8129926  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 29635234 - 29635283
Alignment:
Q  171 tgggttaaataagaaaatggt-cccctagatataccaacatttgatttta 219  Q
    ||||||||||||| ||||||| |||||| ||||| |||||||||||||||    
T  29635234 tgggttaaataagtaaatggtccccctaaatatatcaacatttgatttta 29635283  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 31198302 - 31198346
Alignment:
Q  175 ttaaataagaaaatggtcccctagatataccaacatttgatttta 219  Q
    ||||||||| |||| || ||||| |||||||||||||||||||||    
T  31198302 ttaaataagtaaatagttccctaaatataccaacatttgatttta 31198346  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 29673291 - 29673339
Alignment:
Q  172 gggttaaataagaaaatggtcccc-tagatataccaacatttgatttta 219  Q
    |||||||||||| ||||||||||| || |||||||||||||||||||||    
T  29673291 gggttaaataagtaaatggtccccttaaatataccaacatttgatttta 29673339  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 2847006 - 2846959
Alignment:
Q  172 gggttaaataagaaaatggtcccctagatataccaacatttgatttta 219  Q
    |||||||||||| |||||||| |||| ||| |||||||||||||||||    
T  2847006 gggttaaataagtaaatggtctcctatataaaccaacatttgatttta 2846959  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 2858843 - 2858796
Alignment:
Q  172 gggttaaataagaaaatggtcccctagatataccaacatttgatttta 219  Q
    |||||||||||| |||||||| |||| ||| |||||||||||||||||    
T  2858843 gggttaaataagtaaatggtctcctatataaaccaacatttgatttta 2858796  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 2846571 - 2846621
Alignment:
Q  170 ttgggttaaataagaaaatggt-cccctagatataccaacatttgatttta 219  Q
    |||||||||||||| ||||||| |||||| ||||| |||||||||||||||    
T  2846571 ttgggttaaataagtaaatggtccccctaaatatatcaacatttgatttta 2846621  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 30430271 - 30430318
Alignment:
Q  173 ggttaaataagaaaatggtccc-ctagatataccaacatttgatttta 219  Q
    ||||||||||| |||||||||| ||| |||||||||||||||||||||    
T  30430271 ggttaaataagtaaatggtccctctaaatataccaacatttgatttta 30430318  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 267
Target Start/End: Original strand, 17053526 - 17053559
Alignment:
Q  234 cggctattggccacactacaattgccacgatttt 267  Q
    |||||||||||||||||| |||||||||||||||    
T  17053526 cggctattggccacactataattgccacgatttt 17053559  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 30172071 - 30172119
Alignment:
Q  172 gggttaaataagaaaatggt-cccctagatataccaacatttgatttta 219  Q
    |||||||||||| ||||||| |||||| ||||| |||||||||||||||    
T  30172071 gggttaaataagtaaatggtccccctaaatatatcaacatttgatttta 30172119  T

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Target: scaffold0643 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0643
Description:

Target: scaffold0643; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 267
Target Start/End: Original strand, 6633 - 6666
Alignment:
Q  234 cggctattggccacactacaattgccacgatttt 267  Q
    |||||||||||||||||| |||||||||||||||    
T  6633 cggctattggccacactaaaattgccacgatttt 6666  T

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Target: scaffold0408 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 1241 - 1200
Alignment:
Q  19 ttgcatttgataaacttggcttaatgcatgagatacacttgg 60  Q
    |||||| ||||| |||||||||| ||||||||||||||||||    
T  1241 ttgcatgtgatatacttggcttattgcatgagatacacttgg 1200  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 267
Target Start/End: Complemental strand, 30015449 - 30015416
Alignment:
Q  234 cggctattggccacactacaattgccacgatttt 267  Q
    |||||||||||||||||| |||||||||||||||    
T  30015449 cggctattggccacactaaaattgccacgatttt 30015416  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 267
Target Start/End: Complemental strand, 30074546 - 30074513
Alignment:
Q  234 cggctattggccacactacaattgccacgatttt 267  Q
    |||||||||||||||||| |||||||||||||||    
T  30074546 cggctattggccacactaaaattgccacgatttt 30074513  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 18509497 - 18509545
Alignment:
Q  172 gggttaaataagaaaatggtcccc-tagatataccaacatttgatttta 219  Q
    |||||||||||  ||||||||||| || |||||||||||||||||||||    
T  18509497 gggttaaataattaaatggtccccctaaatataccaacatttgatttta 18509545  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 31212540 - 31212492
Alignment:
Q  172 gggttaaataagaaaatggtc-ccctagatataccaacatttgatttta 219  Q
    |||||||||||| |||| ||| ||||| |||||||||||||||||||||    
T  31212540 gggttaaataagtaaatagtctccctaaatataccaacatttgatttta 31212492  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 14760129 - 14760081
Alignment:
Q  172 gggttaaataagaaaatggtcccct-agatataccaacatttgatttta 219  Q
    |||||||||||| ||||| |||||| | |||||||||||||||||||||    
T  14760129 gggttaaataagtaaatgatccccttaaatataccaacatttgatttta 14760081  T

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