View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16815_low_69 (Length: 258)
Name: NF16815_low_69
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16815_low_69 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 9 - 240
Target Start/End: Complemental strand, 37217051 - 37216820
Alignment:
| Q |
9 |
agcacagattaaatttgaagaattcatataaacgaaggagatctaatttcgattcctttagttatgatttgggggatacctatagagtgaatgacagcga |
108 |
Q |
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| T |
37217051 |
agcatagattaaatttgaagaattcatataaacgaaggagatctaatttcgattcctttagttatgatttgggggatacctatagagtgaatgacggcga |
37216952 |
T |
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| Q |
109 |
catcgtaattgacacacttgtttatgatttaaatgatgtctagcttaattgtgaagataatgatcgagttaggagaaattcggattctacaacgttaaat |
208 |
Q |
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| T |
37216951 |
cattgtaattgacacacttgtttatgatttaaatgatgtctagcttaattgtgaagataatgatcgagttaagagaaattcggattctacaacgttaaat |
37216852 |
T |
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| Q |
209 |
aaagtgttggagttatagggtgggtagctatt |
240 |
Q |
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| T |
37216851 |
aaagtgttggagttatagggtgagtagctatt |
37216820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 41
Target Start/End: Original strand, 38795393 - 38795423
Alignment:
| Q |
11 |
cacagattaaatttgaagaattcatataaac |
41 |
Q |
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| T |
38795393 |
cacagattaaatttgaagaattcatataaac |
38795423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 41
Target Start/End: Original strand, 13369900 - 13369929
Alignment:
| Q |
12 |
acagattaaatttgaagaattcatataaac |
41 |
Q |
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| T |
13369900 |
acagattaaatttgaagaattcatataaac |
13369929 |
T |
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