View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16815_low_7 (Length: 658)
Name: NF16815_low_7
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16815_low_7 |
 | |
|
| [»] scaffold0692 (1 HSPs) |
| | |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 25)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 256 - 616
Target Start/End: Complemental strand, 10605571 - 10605211
Alignment:
| Q |
256 |
taagctctctagtgacatccacaatattcattctttcttttggtgattccattgtacaaataagtccaatcctaaaaagtgaaactaagcactcctctac |
355 |
Q |
| |
|
|||||||| |||| ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||| | |||||||| |
|
|
| T |
10605571 |
taagctctttagtaacatccataatattcattctttctttcggtgattccattgaacaaataagtccaattctaaaaagtgaaactaaggattcctctac |
10605472 |
T |
|
| Q |
356 |
acttggattaagattctcacaattttcatcttctattgctacttctacatctcttgatataagacgtcggtccaaaatcgttttaagattatcaggaaat |
455 |
Q |
| |
|
|||||| |||||||| | ||| ||| |||||||||||||||||||||||||| || ||| || ||||||||||| ||||| ||||||||||||| |
|
|
| T |
10605471 |
ccttggaataagattcgtatggtttccattttctattgctacttctacatctcttgttacaaggtgtgggtccaaaatctctttaatattatcaggaaat |
10605372 |
T |
|
| Q |
456 |
gaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaatttccaacataaggattccaaagctat |
555 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| ||||||||||| || |||||| ||||| ||||| ||||||||||| |||||||||||||||| |
|
|
| T |
10605371 |
gaagttgcaacaaagttatgcagattttgaccatcttgaaaaacttcatcagtgggtctcctaccagtaagtatttccaacatcaggattccaaagctat |
10605272 |
T |
|
| Q |
556 |
acatgtcaccacacgtggacacttcaaaacccattccatactctaaaacatgtagaaaaag |
616 |
Q |
| |
|
||||||||||||| | ||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
10605271 |
acatgtcaccacatatagacacttcagaacccattccatactctgaaacatgtagaaaaag |
10605211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 240 - 616
Target Start/End: Original strand, 10746406 - 10746773
Alignment:
| Q |
240 |
gcctttctgattatgctaagctctctagtgacatccacaatattcattctttcttttggtgattccattgtacaaataagtccaatcctaaaaagtgaaa |
339 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10746406 |
gcctttctgattatgttgagctctctagtgacatccacagtattcattctttcttttggtgattcaattgtacaaataagtccaatcctaaaaagtgaaa |
10746505 |
T |
|
| Q |
340 |
ctaagcactcctctacacttggattaagattctcacaattttcatcttctattgctacttctacatctcttgatataagacgtcggtccaaaatcgtttt |
439 |
Q |
| |
|
|||| ||||| | |||| ||||| ||||||||||| ||| ||||||||| ||| ||||||||||| |||| | ||||||| || || | |
|
|
| T |
10746506 |
ctaaacactcttttacagttggaataagattctcattgtttccatcttctactgc---------atctcttgatagaagatgcgggtccaagatatttat |
10746596 |
T |
|
| Q |
440 |
aagattatcaggaaatgaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaatttccaacata |
539 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||| ||||||| |||| |
|
|
| T |
10746597 |
aagattatcaggaaacgatattgcaacaaagttatgcagattttgaccatcttcaaaaacttcatcagtgggtcttctaccagtaagcatttccagcata |
10746696 |
T |
|
| Q |
540 |
aggattccaaagctatacatgtcaccacacgtggacacttcaaaacccattccatactctaaaacatgtagaaaaag |
616 |
Q |
| |
|
|||||||||||||||||||| |||||| | |||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
10746697 |
aggattccaaagctatacatatcaccatatgtggacacttcagaacccattccatactctaaaacatgtagcaaaag |
10746773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 240 - 609
Target Start/End: Complemental strand, 10581830 - 10581461
Alignment:
| Q |
240 |
gcctttctgattatgctaagctctctagtgacatccacaatattcattctttcttttggtgattccattgtacaaataagtccaatcctaaaaagtgaaa |
339 |
Q |
| |
|
|||||||||||||| ||||||||| || |||||| ||||||||| ||||||||||||||| ||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
10581830 |
gcctttctgattatactaagctctatacatacatcctcaatattcagtctttcttttggtgactccattgaacacataagtccaatcctaaaaagtgaaa |
10581731 |
T |
|
| Q |
340 |
ctaagcactcctctacacttggattaagattctcacaattttcatcttctattgctacttctacatctcttgatataagacgtcggtccaaaatcgtttt |
439 |
Q |
| |
|
|||||||||||| | || |||| ||||||||||| |||| ||||||| ||| |||||||| | || ||||||| |||| || |||||||||| | || |
|
|
| T |
10581730 |
ctaagcactcctttgcagctggaataagattctcaagatttccatcttccatttctacttctgcgtcccttgataaaagatgtgggtccaaaattttctt |
10581631 |
T |
|
| Q |
440 |
aagattatcaggaaatgaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaatttccaacata |
539 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| | | || || |||||||||||||||||| |||||||||||| |
|
|
| T |
10581630 |
aagattagcaggaaatgatattgcaacaaagttatgcagattttgaccatcttcaaaagcgtgatcagtgggtcttctaccggtaagcatttccaacata |
10581531 |
T |
|
| Q |
540 |
aggattccaaagctatacatgtcaccacacgtggacacttcaaaacccattccatactctaaaacatgta |
609 |
Q |
| |
|
||||||||||||||||||||||||||||| | || |||||| ||||||| |||||||||||| |||||| |
|
|
| T |
10581530 |
aggattccaaagctatacatgtcaccacatgcagatacttcagaacccatcccatactctaaagcatgta |
10581461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 240 - 618
Target Start/End: Complemental strand, 10565838 - 10565460
Alignment:
| Q |
240 |
gcctttctgattatgctaagctctctagtgacatccacaatattcattctttcttttggtgattccattgtacaaataagtccaatcctaaaaagtgaaa |
339 |
Q |
| |
|
|||||||||||||| |||||||||||| ||| || |||| || ||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
10565838 |
gcctttctgattatactaagctctctacatacaacctcaatgttgattctttcttttggtgactccattgaacacataagtccaatcctaaaaagtgaaa |
10565739 |
T |
|
| Q |
340 |
ctaagcactcctctacacttggattaagattctcacaattttcatcttctattgctacttctacatctcttgatataagacgtcggtccaaaatcgtttt |
439 |
Q |
| |
|
|||||||||||| | || |||| ||||||||||| |||| |||||| ||| | |||||| |||| |||||| |||| || ||||||||||| | || |
|
|
| T |
10565738 |
ctaagcactcctttgcaggtggaataagattctcatgatttccatctttcatttcaacttctgcatccattgataaaagatgtgggtccaaaatcttctt |
10565639 |
T |
|
| Q |
440 |
aagattatcaggaaatgaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaatttccaacata |
539 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| | | || || |||||||||||||||||| |||||||||||| |
|
|
| T |
10565638 |
aagattaccaggaaatgatattgcaacaaagttatgcagattttgaccatcttcaaaagcgtgatcagtgggtcttctaccggtaagcatttccaacata |
10565539 |
T |
|
| Q |
540 |
aggattccaaagctatacatgtcaccacacgtggacacttcaaaacccattccatactctaaaacatgtagaaaaagtt |
618 |
Q |
| |
|
| |||||||||||||||||| |||||||| ||||| |||||| |||||| ||||||||||||||||||| ||||||| |
|
|
| T |
10565538 |
aagattccaaagctatacatatcaccacatgtggatacttcagcacccatcccatactctaaaacatgtaacaaaagtt |
10565460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 256 - 616
Target Start/End: Complemental strand, 10612529 - 10612169
Alignment:
| Q |
256 |
taagctctctagtgacatccacaatattcattctttcttttggtgattccattgtacaaataagtccaatcctaaaaagtgaaactaagcactcctctac |
355 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
10612529 |
taagttctctagtaacatccacaatattcattctttctttgggtgattccattgaacaaagaagtccaatcctaaaaagtgaaactaagcactcctttaa |
10612430 |
T |
|
| Q |
356 |
acttggattaagattctcacaattttcatcttctattgctacttctacatctcttgatataagacgtcggtccaaaatcgttttaagattatcaggaaat |
455 |
Q |
| |
|
||||||| |||||||||||| ||| |||||| |||| |||||||| ||| | |||| | |||| || ||||||| ||| || |||||||| ||||||| |
|
|
| T |
10612429 |
acttggaataagattctcactctttccatcttgtatttctacttctgcatattttgacacaagatgtgggtccaagatctttataagattagcaggaaac |
10612330 |
T |
|
| Q |
456 |
gaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaatttccaacataaggattccaaagctat |
555 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||| | |||| || |||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10612329 |
agtgttgcaacaaagttatgtagattttgatcatcttcaaatgcctcatcagtgggtcttctaccggtaagcatttccaacataaggattccaaagctat |
10612230 |
T |
|
| Q |
556 |
acatgtcaccacacgtggacacttcaaaacccattccatactctaaaacatgtagaaaaag |
616 |
Q |
| |
|
|||| |||||||| ||||| |||||| |||||| |||||||||||||||||||| ||||| |
|
|
| T |
10612229 |
acatatcaccacatgtggatacttcagcacccatcccatactctaaaacatgtagcaaaag |
10612169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 240 - 621
Target Start/End: Original strand, 10739800 - 10740181
Alignment:
| Q |
240 |
gcctttctgattatgctaagctctctagtgacatccacaatattcattctttcttttggtgattccattgtacaaataagtccaatcctaaaaagtgaaa |
339 |
Q |
| |
|
||||||| |||| || |||||||| | | ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
10739800 |
gcctttcggattgtgttaagctcttgattaacatccataatattcattctttctttcggtgattccattgaacaaataagtccaattctaaaaagtgaaa |
10739899 |
T |
|
| Q |
340 |
ctaagcactcctctacacttggattaagattctcacaattttcatcttctattgctacttctacatctcttgatataagacgtcggtccaaaatcgtttt |
439 |
Q |
| |
|
||||| | |||||||| | ||| ||| || | | ||| |||||| ||||| ||||||||||||||||| | |||| || ||||||||||| | | |
|
|
| T |
10739900 |
ctaaggattcctctaccccaggaactagaatcgctcggtttccatcttgtattgttacttctacatctcttgcttcaagatgtgggtccaaaatctctat |
10739999 |
T |
|
| Q |
440 |
aagattatcaggaaatgaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaatttccaacata |
539 |
Q |
| |
|
|| ||| ||||||| ||| |||| ||||||||||| |||||||||||||||| ||||||||||| || |||||||||||||||||| |||||||||||| |
|
|
| T |
10740000 |
aatgttaccaggaaacgaagttgctacaaagttatgtagattttgaccatcttgaaaaacttcatcagtgggtcttctaccggtaagtatttccaacata |
10740099 |
T |
|
| Q |
540 |
aggattccaaagctatacatgtcaccacacgtggacacttcaaaacccattccatactctaaaacatgtagaaaaagttgtt |
621 |
Q |
| |
|
||||||||||||||||||||||||||| | || ||||||||| ||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
10740100 |
aggattccaaagctatacatgtcaccagatgttgacacttcagaacccattccatactctaaaacatgcagcaaaagttgtt |
10740181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 242 - 616
Target Start/End: Original strand, 10716365 - 10716727
Alignment:
| Q |
242 |
ctttctgattatgctaagctctctagtgacatccacaatattcattctttcttttggtgattccattgtacaaataagtccaatcctaaaaagtgaaact |
341 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||| |||||||||||| ||||| |||||| |
|
|
| T |
10716365 |
ctttctgattatgttgagctctctagtgacatccataatattcattctttctatcggtgattccattgtacaaacaagtccaatcctgaaaagagaaact |
10716464 |
T |
|
| Q |
342 |
aagcactcctctacacttggattaagattctcacaattttcatcttctattgctacttctacatctcttgatataagacgtcggtccaaaatcgttttaa |
441 |
Q |
| |
|
||||| || | ||| ||| |||||||||| | |||| || ||||| |||||||||||| |||| || | ||||||||| || ||| |
|
|
| T |
10716465 |
aagcattcatttaccgcaggaataagattctc-------tatgcttccat-----cttctgcatctcttgatacaagatgtggatccaaaatctttataa |
10716552 |
T |
|
| Q |
442 |
gattatcaggaaatgaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaatttccaacataag |
541 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| || |||||||||||||||||| |||||||||||||| |
|
|
| T |
10716553 |
gattgtcaggaaatgaagatgcaacaaagttatgcagattttgaccatcttgaaaaaattcatcagtgggtcttctaccggtaagcatttccaacataag |
10716652 |
T |
|
| Q |
542 |
gattccaaagctatacatgtcaccacacgtggacacttcaaaacccattccatactctaaaacatgtagaaaaag |
616 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||| ||||| |
|
|
| T |
10716653 |
gattccaaagctatacatgtcaccacatgtggacacttcagaacccattccatactctgaaacatgtagcaaaag |
10716727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 256 - 609
Target Start/End: Original strand, 10762231 - 10762584
Alignment:
| Q |
256 |
taagctctctagtgacatccacaatattcattctttcttttggtgattccattgtacaaataagtccaatcctaaaaagtgaaactaagcactcctctac |
355 |
Q |
| |
|
|||||||| ||| ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||| | |||||||| |
|
|
| T |
10762231 |
taagctcttgagtaacatccataatattcattctttctttcggtgattccattgaacaaataagtccaattctaaaaagtgaaactaaggattcctctac |
10762330 |
T |
|
| Q |
356 |
acttggattaagattctcacaattttcatcttctattgctacttctacatctcttgatataagacgtcggtccaaaatcgttttaagattatcaggaaat |
455 |
Q |
| |
|
| || | ||||| || | | ||| |||||| | ||| ||||||||||||||||| | |||| || |||||||||| | ||| ||| |||||||| |
|
|
| T |
10762331 |
ccctgcaataagaatcgctcggtttccatcttgttttgttacttctacatctcttgcttcaagatgtgggtccaaaatatctataatgttaccaggaaat |
10762430 |
T |
|
| Q |
456 |
gaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaatttccaacataaggattccaaagctat |
555 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||||| ||||||||||| || |||||||||||| ||||| |||| ||||||||||| ||||||||||| |
|
|
| T |
10762431 |
gaagctgctacaaagttatgcagattttgaccatcttgaaaaacttcatcagtgggtcttctaccagtaagtattttcaacataaggactccaaagctat |
10762530 |
T |
|
| Q |
556 |
acatgtcaccacacgtggacacttcaaaacccattccatactctaaaacatgta |
609 |
Q |
| |
|
||||||||||| | || ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
10762531 |
acatgtcaccagatgttgacacttcagaacccattccatactctaaaacatgta |
10762584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 9 - 224
Target Start/End: Original strand, 11048013 - 11048244
Alignment:
| Q |
9 |
acatcatcacacataatttaatgttgcaaaccaaattcattgaacacactcatacacgcttccagctagacacttcttctcccacaaatgaccttataaa |
108 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11048013 |
acataatcacacataatttaatcttgcaaaccaaattcattgaacacactcatacacgcttccagctagacacttcttctcccacaaatgaccttataaa |
11048112 |
T |
|
| Q |
109 |
tttagt----------------gtgaacacctgaaattcaaatcaagaggaagctcgttattgcctttgtattttgtaggttaggaattttgatatgcaa |
192 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11048113 |
tttagttcaattacttatgagtgtgaacacctgaaattcaaatcaagaggaagcttgttattgcctttgtattttgtaggttagaaattttgatatgcaa |
11048212 |
T |
|
| Q |
193 |
tcaattaatgaggagaaaaagtgtcaagtatc |
224 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |
|
|
| T |
11048213 |
tcaattaatgaggagaaaaagtgttaagtatc |
11048244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 445 - 622
Target Start/End: Original strand, 11048241 - 11048418
Alignment:
| Q |
445 |
tatcaggaaatgaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaatttccaacataaggat |
544 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
11048241 |
tatcaggaagtgaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcatgggtgggtcttctaccggtaagcatttccaacataaggat |
11048340 |
T |
|
| Q |
545 |
tccaaagctatacatgtcaccacacgtggacacttcaaaacccattccatactctaaaacatgtagaaaaagttgttg |
622 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11048341 |
tccaaagctatacatgtcaccacacgtggacacttcagaacccattccatactctaaaacatgtagaaaaagttgttg |
11048418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 282 - 603
Target Start/End: Original strand, 10651619 - 10651940
Alignment:
| Q |
282 |
ttcattctttcttttggtgattccattgtacaaataagtccaatcctaaaaagtgaaactaagcactcctctacacttggattaagattctcacaatttt |
381 |
Q |
| |
|
|||||||||||||||||||||| || || |||| |||||||||||| |||||||||||||| |||| ||||||| ||||| | | ||| |||| ||| |
|
|
| T |
10651619 |
ttcattctttcttttggtgatttcactgaacaagcaagtccaatcctgaaaagtgaaactaaacacttctctacagttggagtgaaatttccacagtttc |
10651718 |
T |
|
| Q |
382 |
catcttctattgctacttctacatctcttgatataagacgtcggtccaaaatcgttttaagattatcaggaaatgaaattgcaacaaagttatgcagatt |
481 |
Q |
| |
|
| ||||||||| || ||||| ||| ||||| || |||| || | ||||||||| | ||| ||||| ||||||||||||| ||||||| |||||| ||| |
|
|
| T |
10651719 |
cttcttctatttcttcttcttcatttcttggtacaagatgtggatccaaaatctgtataatattattaggaaatgaaattccaacaaacatatgcaaatt |
10651818 |
T |
|
| Q |
482 |
ttgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaatttccaacataaggattccaaagctatacatgtcaccacacgtggacacttca |
581 |
Q |
| |
|
|||||| |||||||| | | ||| | |||||||| |||||||| |||||||||||||| | || |||||||||||||||||| | ||||| | |||| |
|
|
| T |
10651819 |
ttgaccttcttcaaacattccatctgttggtcttcttccggtaagcatttccaacataagcaccccgaagctatacatgtcaccatatgtggatatttca |
10651918 |
T |
|
| Q |
582 |
aaacccattccatactctaaaa |
603 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
10651919 |
gaacccattccatactctaaaa |
10651940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 247 - 600
Target Start/End: Complemental strand, 7193834 - 7193481
Alignment:
| Q |
247 |
tgattatgctaagctctctagtgacatccacaatattcattctttcttttggtgattccattgtacaaataagtccaatcctaaaaagtgaaactaagca |
346 |
Q |
| |
|
|||||||||| | ||||| |||||||||| |||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||| ||| |
|
|
| T |
7193834 |
tgattatgcttaagtctctgatgacatccactatattcattctttcttttggtgattccactgaacaagcaagtccaatcctaaaaagtgaaactacgca |
7193735 |
T |
|
| Q |
347 |
ctcctctacacttggattaagattctcacaattttcatcttctattgctacttctacatctcttgatataagacgtcggtccaaaatcgttttaagatta |
446 |
Q |
| |
|
|| ||||||| ||||| | | ||| ||| ||| |||||||||||| | |||||| || ||||| || |||| | |||||||||| | |||||||| |
|
|
| T |
7193734 |
cttctctacatttggagtgaaatttccactgtttccatcttctattgttgcttctatatttcttggtacaagatttgggtccaaaatatgtataagatta |
7193635 |
T |
|
| Q |
447 |
tcaggaaatgaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaatttccaacataaggattc |
546 |
Q |
| |
|
| ||| || |||||| ||||||| || | ||||||||||||| ||||| | ||||| | ||||| || ||||||||||||||||||| ||| || | |
|
|
| T |
7193634 |
ttaggcaacgaaatttcaacaaaaatacgtagattttgaccattgtcaaacatttcatctaccggtctccttccggtaagaatttccaacaaaagcatcc |
7193535 |
T |
|
| Q |
547 |
caaagctatacatgtcaccacacgtggacacttcaaaacccattccatactcta |
600 |
Q |
| |
|
| ||||||||||| |||||| | || || |||||| ||||||||||||| |||| |
|
|
| T |
7193534 |
cgaagctatacatatcaccatatgtagatacttcagaacccattccatattcta |
7193481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 238 - 603
Target Start/End: Original strand, 10659458 - 10659823
Alignment:
| Q |
238 |
atgcctttctgattatgctaagctctctagtgacatccacaatattcattctttcttttggtgattccattgtacaaataagtccaatcctaaaaagtga |
337 |
Q |
| |
|
|||||||| |||||||||| | |||||| |||||||| || ||||||||||||||||||||||||| || || ||| ||||||||||| ||||||||| |
|
|
| T |
10659458 |
atgcctttttgattatgcttaactctctggtgacatcaactatattcattctttcttttggtgatttcactgaacatgcaagtccaatccgaaaaagtga |
10659557 |
T |
|
| Q |
338 |
aactaagcactcctctacacttggattaagattctcacaattttcatcttctattgctacttctacatctcttgatataagacgtcggtccaaaatcgtt |
437 |
Q |
| |
|
||||||||||| |||||| ||||| | ||| ||| ||| | ||||||||| ||||| ||| ||||| || |||| || ||||||||||| | |
|
|
| T |
10659558 |
aactaagcacttctctacgattggagggaaatttccactctttccttcttctattttggcttcttcatttcttggtacaagatgtgggtccaaaatctgt |
10659657 |
T |
|
| Q |
438 |
ttaagattatcaggaaatgaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaatttccaaca |
537 |
Q |
| |
|
|| ||||| |||||||||||| ||||||| |||||||||||||||| |||||||| | ||||| | |||||||| |||||||| |||||||||| |
|
|
| T |
10659658 |
aaaatattatttggaaatgaaatttcaacaaatatatgcagattttgaccctcttcaaacatttcatccgttggtcttcttccggtaagcatttccaaca |
10659757 |
T |
|
| Q |
538 |
taaggattccaaagctatacatgtcaccacacgtggacacttcaaaacccattccatactctaaaa |
603 |
Q |
| |
|
||| | || |||||||||||||||||| ||||| | ||| ||||||||||||||||||||| |
|
|
| T |
10659758 |
gaagcaccccgaagctatacatgtcaccatgtgtggatatctcagaacccattccatactctaaaa |
10659823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 258 - 606
Target Start/End: Original strand, 9835721 - 9836069
Alignment:
| Q |
258 |
agctctctagtgacatccacaatattcattctttcttttggtgattccattgtacaaataagtccaatcctaaaaagtgaaactaagcactcctctacac |
357 |
Q |
| |
|
||||||||||| ||||| || || ||||||||||||||||||||||| ||| ||| |||||||||||| |||| |||||||||||| | || |||| |
|
|
| T |
9835721 |
agctctctagtaacatctactatgttcattctttcttttggtgattctcttgaacaggcaagtccaatccttaaaactgaaactaagcaattctttacag |
9835820 |
T |
|
| Q |
358 |
ttggattaagattctcacaattttcatcttctattgctacttctacatctcttgatataagacgtcggtccaaaatcgttttaagattatcaggaaatga |
457 |
Q |
| |
|
|||| |||||||||||| |||| |||||||||||||| ||||| ||||||||| || || | || ||||||||||| | ||||||| ||| ||||| |
|
|
| T |
9835821 |
ctggaataagattctcactatttccatcttctattgctgcttcttcatctcttggtacaaaatgttggtccaaaatctgtgaaagattaccagctaatga |
9835920 |
T |
|
| Q |
458 |
aattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaatttccaacataaggattccaaagctatac |
557 |
Q |
| |
|
| || || |||| || | |||||||||||||| ||||| ||||| | |||||||| || |||| |||||||||| || || |||||||||||| |
|
|
| T |
9835921 |
actttcagcaaacgtacgtagattttgaccatcctcaaatctttcatctgtaggtcttcttccagtaatcatttccaacacgagcatcccaaagctatac |
9836020 |
T |
|
| Q |
558 |
atgtcaccacacgtggacacttcaaaacccattccatactctaaaacat |
606 |
Q |
| |
|
||||||||| | || || ||||| |||||||||||||||||||||||| |
|
|
| T |
9836021 |
atgtcaccatatgttgatgcttcagaacccattccatactctaaaacat |
9836069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 258 - 566
Target Start/End: Original strand, 9827352 - 9827660
Alignment:
| Q |
258 |
agctctctagtgacatccacaatattcattctttcttttggtgattccattgtacaaataagtccaatcctaaaaagtgaaactaagcactcctctacac |
357 |
Q |
| |
|
||||||||||| ||||| || || ||||||||||||||||||||||| ||| ||| |||||||||||| |||| |||||||||||| | || |||| |
|
|
| T |
9827352 |
agctctctagtaacatctactatgttcattctttcttttggtgattctcttgaacaggcaagtccaatccttaaaactgaaactaagcaattctttacag |
9827451 |
T |
|
| Q |
358 |
ttggattaagattctcacaattttcatcttctattgctacttctacatctcttgatataagacgtcggtccaaaatcgttttaagattatcaggaaatga |
457 |
Q |
| |
|
|||| |||||||||||| |||| |||||||||||||| ||||| ||||||||| || || | || ||| ||||||| | ||||||||||| ||||| |
|
|
| T |
9827452 |
ctggaataagattctcactatttccatcttctattgctgcttcttcatctcttggtacaaaatgttggttcaaaatctgtgaaagattatcagctaatga |
9827551 |
T |
|
| Q |
458 |
aattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaatttccaacataaggattccaaagctatac |
557 |
Q |
| |
|
| || || |||| || | |||||||||||||| ||||| ||||| | |||||||| || |||| |||||||||| || || |||||||||||| |
|
|
| T |
9827552 |
actttcagcaaacgtacgtagattttgaccatcctcaaatctttcatctgtaggtcttcttccagtaatcatttccaacacgagcatcccaaagctatac |
9827651 |
T |
|
| Q |
558 |
atgtcacca |
566 |
Q |
| |
|
||||||||| |
|
|
| T |
9827652 |
atgtcacca |
9827660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 283 - 600
Target Start/End: Original strand, 10587895 - 10588194
Alignment:
| Q |
283 |
tcattctttcttttggtgattccattgtacaaataagtccaatcctaaaaagtgaaactaagcactcctctacacttggattaagattctcacaattttc |
382 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||||| | ||||||||||||||||| ||| | |||| ||||||||||| || | | |
|
|
| T |
10587895 |
tcattctttcttttggtgattccattgaacaagcaagtccaatccttagaagtgaaactaagcacttctccttagctggaataagattctcattatgtcc |
10587994 |
T |
|
| Q |
383 |
atcttctattgctacttctacatctcttgatataagacgtcggtccaaaatcgttttaagattatcaggaaatgaaattgcaacaaagttatgcagattt |
482 |
Q |
| |
|
||||||||||| || |||| || ||||||||||| | |||||||||| |||||||| || ||||||| |||| |||||| |
|
|
| T |
10587995 |
atcttctattgaaac------------------aagatgtgggtccaaaatctgtataagattatcttgaaatgaactttcaacaaacatatgtagattt |
10588076 |
T |
|
| Q |
483 |
tgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaatttccaacataaggattccaaagctatacatgtcaccacacgtggacacttcaa |
582 |
Q |
| |
|
|||||||||||||| | ||||| | ||||||||| ||||| | |||||||||||||| || ||||||||||||||||||||| | ||||| |||||| |
|
|
| T |
10588077 |
tgaccatcttcaaacatttcatctgtgggtcttcttccggtgatcatttccaacataagcatcccaaagctatacatgtcaccagatgtggatacttcag |
10588176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 241 - 603
Target Start/End: Complemental strand, 10559732 - 10559370
Alignment:
| Q |
241 |
cctttctgattatgctaagctctctagtgacatccacaatattcattctttcttttggtgattccattgtacaaataagtccaatcctaaaaagtgaaac |
340 |
Q |
| |
|
|||||||||| ||| | || |||||||||||||||| ||||||||||||| | |||| ||||||| | ||| ||||||||||||||| |||||||| |
|
|
| T |
10559732 |
cctttctgatcatgtttagttctctagtgacatccaatatattcattctttgtgttggcgattccaccgaacatgcaagtccaatcctaaagagtgaaac |
10559633 |
T |
|
| Q |
341 |
taagcactcctctacacttggattaagattctcacaattttcatcttctattgctacttctacatctcttgatataagacgtcggtccaaaatcgtttta |
440 |
Q |
| |
|
|||| | | | || || | ||||||||| || ||||||||||||| |||| | ||||||| || || | || ||||||||||| || |
|
|
| T |
10559632 |
taaggatttatgtattaatgaaataagattcttcttgcttctatcttctattgctgcttcctcttctcttggtacaatatgtgggtccaaaatctgcata |
10559533 |
T |
|
| Q |
441 |
agattatcaggaaatgaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaatttccaacataa |
540 |
Q |
| |
|
| ||||| |||||||||| || ||||| | ||||||||||||||||||| ||| | ||||| || |||||||| || |||| |||||||| |||| |
|
|
| T |
10559532 |
acattattaggaaatgaattttcaacatacaaatgcagattttgaccatctaaaaacatttcatcagttggtcttcttcctgtaatcatttccaatataa |
10559433 |
T |
|
| Q |
541 |
ggattccaaagctatacatgtcaccacacgtggacacttcaaaacccattccatactctaaaa |
603 |
Q |
| |
|
| || ||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||| |
|
|
| T |
10559432 |
gcatcccaaagctatacatgtcaccatgtgtggaaacttcagaacccattccatactctaaaa |
10559370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 242 - 603
Target Start/End: Original strand, 19605243 - 19605604
Alignment:
| Q |
242 |
ctttctgattatgctaagctctctagtgacatccacaatattcattctttcttttggtgattccattgtacaaataagtccaatcctaaaaagtgaaact |
341 |
Q |
| |
|
||||||||||||| | |||||||||||| |||| | ||||||||||||||||| || |||||||| | ||| ||||||||||||||||| ||||| |
|
|
| T |
19605243 |
ctttctgattatgtttagctctctagtggcatcttctatattcattctttctttgggagattccatcgaacaggcaagtccaatcctaaaaatggaaaca |
19605342 |
T |
|
| Q |
342 |
aagcactcctctacacttggattaagattctcacaattttcatcttctattgctacttctacatctcttgatataagacgtcggtccaaaatcgttttaa |
441 |
Q |
| |
|
||||| | || | ||| | |||||| | | || |||| ||||||| | ||||| || |||||| || || || ||||||||||| | ||| |
|
|
| T |
19605343 |
aagcatttatccatcgttgaaataagatgccgattgcttccatcatctattgttgcttcttcaactcttggtacaatacacgggtccaaaatcttcataa |
19605442 |
T |
|
| Q |
442 |
gattatcaggaaatgaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaatttccaacataag |
541 |
Q |
| |
|
|||||||||||||||||| ||||| | | ||||||||||||||||| ||| | |||| | |||||||| || ||||| |||||||| ||||| |
|
|
| T |
19605443 |
tgttatcaggaaatgaaatttcaacatacaaacgcagattttgaccatctgtaaacatgtcatccgtcggtcttcttcccgtaagcatttccaatataag |
19605542 |
T |
|
| Q |
542 |
gattccaaagctatacatgtcaccacacgtggacacttcaaaacccattccatactctaaaa |
603 |
Q |
| |
|
|| |||||||||||||| |||||| ||||| |||||| ||| ||||||||||||||||| |
|
|
| T |
19605543 |
catcccaaagctatacatatcaccatgtgtggaaacttcagaactcattccatactctaaaa |
19605604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 323 - 419
Target Start/End: Original strand, 10760796 - 10760892
Alignment:
| Q |
323 |
aatcctaaaaagtgaaactaagcactcctctacacttggattaagattctcacaattttcatcttctattgctacttctacatctcttgatataaga |
419 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||||||| |||||||| || ||| |||||| |||| |||||| |||||||||||||| |||| |
|
|
| T |
10760796 |
aatcctaaacagtgaaactaagcacttctctacacttggaataagattcccattgtttccatcttgtatttctacttttacatctcttgatacaaga |
10760892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 522 - 603
Target Start/End: Complemental strand, 9825604 - 9825523
Alignment:
| Q |
522 |
gtaagaatttccaacataaggattccaaagctatacatgtcaccacacgtggacacttcaaaacccattccatactctaaaa |
603 |
Q |
| |
|
||||| |||||||| ||| | |||||||||||||||||||||||| | ||||| |||| | || |||||||||||||||||| |
|
|
| T |
9825604 |
gtaagcatttccaatataggaattccaaagctatacatgtcaccataagtggaaactttagaatccattccatactctaaaa |
9825523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 270 - 356
Target Start/End: Complemental strand, 10551606 - 10551520
Alignment:
| Q |
270 |
acatccacaatattcattctttcttttggtgattccattgtacaaataagtccaatcctaaaaagtgaaactaagcactcctctaca |
356 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||| || |||| |||| ||||||||| |||||||| ||| || | ||||||| |
|
|
| T |
10551606 |
acatcaaccatattcattctttcttttggtgattccactgaacaagaaagtgcaatcctaagaagtgaaagtaaacatttctctaca |
10551520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 543 - 599
Target Start/End: Complemental strand, 10551336 - 10551280
Alignment:
| Q |
543 |
attccaaagctatacatgtcaccacacgtggacacttcaaaacccattccatactct |
599 |
Q |
| |
|
||||||||||||||||||||||| || ||||| ||||||||||||||||||||| |
|
|
| T |
10551336 |
attccaaagctatacatgtcaccttcagttgacacctcaaaacccattccatactct |
10551280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 183
Target Start/End: Complemental strand, 10566012 - 10565949
Alignment:
| Q |
120 |
cacctgaaattcaaatcaagaggaagctcgttattgcctttgtattttgtaggttaggaatttt |
183 |
Q |
| |
|
||||||||||||||||||||| ||| | ||||| || ||||||||||||| ||||||||||| |
|
|
| T |
10566012 |
cacctgaaattcaaatcaagaagaaatccattattaccattgtattttgtagtttaggaatttt |
10565949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 300
Target Start/End: Original strand, 9849623 - 9849680
Alignment:
| Q |
243 |
tttctgattatgctaagctctctagtgacatccacaatattcattctttcttttggtg |
300 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||| ||||||||||| |||| |||| |
|
|
| T |
9849623 |
tttctgattatgtttagctctctagtgacatccattgtattcattcttgctttcggtg |
9849680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 573 - 609
Target Start/End: Original strand, 10216487 - 10216523
Alignment:
| Q |
573 |
gacacttcaaaacccattccatactctaaaacatgta |
609 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
10216487 |
gacacttcaacacccattccatactctaaaatatgta |
10216523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 256 - 609
Target Start/End: Complemental strand, 12958876 - 12958523
Alignment:
| Q |
256 |
taagctctctagtgacatccacaatattcattctttcttttggtgattccattgtacaaataagtccaatcctaaaaagtgaaactaagcactcctctac |
355 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12958876 |
taagctctctagtgacatcgacaatattcattctttcttttggtgattccaatgaacataaaagtccaatcctaaaaagtgaaactaagcactcctctac |
12958777 |
T |
|
| Q |
356 |
acttggattaagattctcacaattttcatcttctattgctacttctacatctcttgatataagacgtcggtccaaaatcgttttaagattatcaggaaat |
455 |
Q |
| |
|
| ||||| ||||| ||||| |||| |||||||| ||||| | ||| || |||||| || |||| || | ||||| ||| || | ||||||||||||||| |
|
|
| T |
12958776 |
agttggaataagaatctcatgatttccatcttctcttgctccatcttcagctcttggtaaaagatgtggatccaacatctttattagattatcaggaaat |
12958677 |
T |
|
| Q |
456 |
gaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaatttccaacataaggattccaaagctat |
555 |
Q |
| |
|
||| ||| ||||||||||||||||||||||||||||||||||| ||||| || |||||||||||| ||||| ||||||| |||||||||||||||||||| |
|
|
| T |
12958676 |
gaatttgtaacaaagttatgcagattttgaccatcttcaaaaagttcatcagtgggtcttctaccagtaagcatttccagcataaggattccaaagctat |
12958577 |
T |
|
| Q |
556 |
acatgtcaccacacgtggacacttcaaaacccattccatactctaaaacatgta |
609 |
Q |
| |
|
||||||||||||| ||||| ||||| ||||||| ||||||||||||||||||| |
|
|
| T |
12958576 |
acatgtcaccacatgtggatacttctgaacccatcccatactctaaaacatgta |
12958523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 256 - 609
Target Start/End: Complemental strand, 12907988 - 12907635
Alignment:
| Q |
256 |
taagctctctagtgacatccacaatattcattctttcttttggtgattccattgtacaaataagtccaatcctaaaaagtgaaactaagcactcctctac |
355 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||||| |||||||| || ||| | |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
12907988 |
taagctctctattgacatctacaatattcattctttcttttgttgattccaatgaacataaaagtccaatcctaaaaagtgaagttaagcactcctctac |
12907889 |
T |
|
| Q |
356 |
acttggattaagattctcacaattttcatcttctattgctacttctacatctcttgatataagacgtcggtccaaaatcgttttaagattatcaggaaat |
455 |
Q |
| |
|
| ||||| ||||| ||||| | || ||||||||||| || ||||| || |||||| || |||| || | ||||||||| || ||||||||||||||||| |
|
|
| T |
12907888 |
atttggaataagaatctcatgaattccatcttctattcctccttcttcagctcttggtaaaagatgtggatccaaaatctttataagattatcaggaaat |
12907789 |
T |
|
| Q |
456 |
gaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaatttccaacataaggattccaaagctat |
555 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| ||||| || |||||||||||| ||||| ||||||| |||||||||||||||||||| |
|
|
| T |
12907788 |
gaaattgtaacaaagttatgcagattttgaccatcttcaaaaagttcatcagtgggtcttctaccagtaagcatttccagcataaggattccaaagctat |
12907689 |
T |
|
| Q |
556 |
acatgtcaccacacgtggacacttcaaaacccattccatactctaaaacatgta |
609 |
Q |
| |
|
||||||||||||| ||||| ||||| |||||| ||||||||||||| ||||| |
|
|
| T |
12907688 |
acatgtcaccacaagtggatacttctgaacccaccccatactctaaaatatgta |
12907635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 256 - 607
Target Start/End: Complemental strand, 12933077 - 12932726
Alignment:
| Q |
256 |
taagctctctagtgacatccacaatattcattctttcttttggtgattccattgtacaaataagtccaatcctaaaaagtgaaactaagcactcctctac |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| | |||| ||||||||| ||||||||| ||||| || |||| |
|
|
| T |
12933077 |
taagctctctagtgacatccacaatattcattctttcttttggtgattccaaagaacataaaagtgcaatcctaagaagtgaaacaaagcaatcttctat |
12932978 |
T |
|
| Q |
356 |
acttggattaagattctcacaattttcatcttctattgctacttctacatctcttgatataagacgtcggtccaaaatcgttttaagattatcaggaaat |
455 |
Q |
| |
|
| ||||| || || ||||| |||| |||||||||||||| ||||| || |||||| || |||| || | ||||||||| || ||||||||||||||||| |
|
|
| T |
12932977 |
agttggaatatgaatctcatgatttccatcttctattgctccttcttcagctcttggtaaaagatgtggatccaaaatctttataagattatcaggaaat |
12932878 |
T |
|
| Q |
456 |
gaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaatttccaacataaggattccaaagctat |
555 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| ||||| | |||||||||||| ||||| ||||||| |||||||||||||||||||| |
|
|
| T |
12932877 |
gaaattgtaacaaagttatgcagattttgaccatcttcaaaaagttcatcggtgggtcttctaccagtaagcatttccagcataaggattccaaagctat |
12932778 |
T |
|
| Q |
556 |
acatgtcaccacacgtggacacttcaaaacccattccatactctaaaacatg |
607 |
Q |
| |
|
||||||||||||| ||||| ||||| ||||||| ||||||||||||||||| |
|
|
| T |
12932777 |
acatgtcaccacatgtggaaacttctgaacccatcccatactctaaaacatg |
12932726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 256 - 609
Target Start/End: Complemental strand, 12900371 - 12900015
Alignment:
| Q |
256 |
taagctctctagtgacatccacaatattcattctttcttttggtgattccattgtacaaataagtccaatcctaaaaagtgaaactaagcactcctctac |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| | |||| ||||||||| |||||||||||||||||| |||| |
|
|
| T |
12900371 |
taagctctctagtgacatccacaatattcattctttcttttggtgattccaaagaacataaaagtgcaatcctaagaagtgaaactaagcactcttctat |
12900272 |
T |
|
| Q |
356 |
acttggattaagattctcacaattttcatcttctattgctact---tctacatctcttgatataagacgtcggtccaaaatcgttttaagattatcagga |
452 |
Q |
| |
|
| ||||| || || ||||| |||| |||||||||||||| || ||| || |||||| || |||| || | ||||||||| || |||||||||||||| |
|
|
| T |
12900271 |
agttggaatatgaatctcatgatttccatcttctattgctcctaattcttcagctcttggtaaaagatgtggatccaaaatctttataagattatcagga |
12900172 |
T |
|
| Q |
453 |
aatgaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaatttccaacataaggattccaaagc |
552 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| ||||| || |||||||||||| ||||| ||||||| ||||||||||||||||| |
|
|
| T |
12900171 |
aatgaaattgtaacaaagttatgcagattttgaccatcttcaaaaagttcatcagtgggtcttctaccagtaagcatttccagcataaggattccaaagc |
12900072 |
T |
|
| Q |
553 |
tatacatgtcaccacacgtggacacttcaaaacccattccatactctaaaacatgta |
609 |
Q |
| |
|
|||||||||||||||| ||||| ||||| ||||||| ||||||||||||| ||||| |
|
|
| T |
12900071 |
tatacatgtcaccacaagtggatacttctgaacccatcccatactctaaaatatgta |
12900015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 256 - 609
Target Start/End: Complemental strand, 12949417 - 12949078
Alignment:
| Q |
256 |
taagctctctagtgacatccacaatattcattctttcttttggtgattccattgtacaaataagtccaatcctaaaaagtg-aaactaagcactcctcta |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| |||||||| || ||||| |||||||||||||||||| | ||||| ||||||| |||| |
|
|
| T |
12949417 |
taagctctctagtgacatccacaatattcattctttcatttgatgattccaatgaacaaaaaagtccaatcctaaaaaggggaaactgagcactcttcta |
12949318 |
T |
|
| Q |
355 |
cacttggattaagattctcacaattttcatcttctattgctacttctacatctcttgatataagacgtcggtccaaaatcgttttaagattatcaggaaa |
454 |
Q |
| |
|
| ||||| ||||| ||||| |||| ||||||| | |||||| || |||| || | ||||||||| || | ||||| ||||| |
|
|
| T |
12949317 |
tagttggaataagaatctcatgatttccatcttc---------------agctcttggtaaaagatgtggatccaaaatctttacgaaattattgggaaa |
12949233 |
T |
|
| Q |
455 |
tgaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaatttccaacataaggattccaaagcta |
554 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| ||||| || |||||||||||| ||||| ||||||| ||||||||||||||||||| |
|
|
| T |
12949232 |
tgaaattttaacaaagttatgcagattttgaccatcttcaaaaagttcatcagtgggtcttctaccagtaagcatttccagcataaggattccaaagcta |
12949133 |
T |
|
| Q |
555 |
tacatgtcaccacacgtggacacttcaaaacccattccatactctaaaacatgta |
609 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||||| ||||||||||||||||||| |
|
|
| T |
12949132 |
tacatgtcaccacaagtggatacttccgaacccatcccatactctaaaacatgta |
12949078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 174; Significance: 3e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 256 - 609
Target Start/End: Original strand, 17922808 - 17923161
Alignment:
| Q |
256 |
taagctctctagtgacatccacaatattcattctttcttttggtgattccattgtacaaataagtccaatcctaaaaagtgaaactaagcactcctctac |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
17922808 |
taagctctctagtgacatccacaatattcattctttcttttggtgattccaatgaacaaaaaagtccaatcctaaaaagggaaactaagcactcctctac |
17922907 |
T |
|
| Q |
356 |
acttggattaagattctcacaattttcatcttctattgctacttctacatctcttgatataagacgtcggtccaaaatcgttttaagattatcaggaaat |
455 |
Q |
| |
|
| ||||| |||| ||||| |||| |||||||| |||| | ||| || |||||| || |||| || | ||||||||| || ||||||| ||||||| |
|
|
| T |
17922908 |
agttggaagaagaatctcatgatttccatcttctcgtgctccatcttcagctcttggtaaaagatgtggatccaaaatctttataagattgcaaggaaat |
17923007 |
T |
|
| Q |
456 |
gaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaagaatttccaacataaggattccaaagctat |
555 |
Q |
| |
|
||||||| |||||||||||| ||||||||||| |||| ||||| ||||| | ||||||||| |||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
17923008 |
gaaattgtaacaaagttatgtagattttgaccgtctttaaaaagttcatcggtgggtcttcttccggtaagcatttccagcataaggattccaaagctat |
17923107 |
T |
|
| Q |
556 |
acatgtcaccacacgtggacacttcaaaacccattccatactctaaaacatgta |
609 |
Q |
| |
|
||||||||||| | ||||| ||||| ||||||| ||||||||||||| ||||| |
|
|
| T |
17923108 |
acatgtcaccataagtggatacttctgaacccatcccatactctaaaatatgta |
17923161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0692 (Bit Score: 128; Significance: 8e-66; HSPs: 1)
Name: scaffold0692
Description:
Target: scaffold0692; HSP #1
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 426 - 609
Target Start/End: Complemental strand, 7921 - 7738
Alignment:
| Q |
426 |
tccaaaatcgttttaagattatcaggaaatgaaattgcaacaaagttatgcagattttgaccatcttcaaaaacttcattagcgggtcttctaccggtaa |
525 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || |||||||||||| |||| |
|
|
| T |
7921 |
tccaaaatctttataagattatcaggaaatgaaattgtaacaaagttatgcagattttgaccatcttcaaaaagttcatcagtgggtcttctaccagtaa |
7822 |
T |
|
| Q |
526 |
gaatttccaacataaggattccaaagctatacatgtcaccacacgtggacacttcaaaacccattccatactctaaaacatgta |
609 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||||||||||||| ||||| ||||| ||||||| ||||||||||||||||||| |
|
|
| T |
7821 |
gcatttccagcataaggattccaaagctatacatgtcaccacatgtggatacttcttaacccatcccatactctaaaacatgta |
7738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 256 - 356
Target Start/End: Original strand, 31466548 - 31466648
Alignment:
| Q |
256 |
taagctctctagtgacatccacaatattcattctttcttttggtgattccattgtacaaataagtccaatcctaaaaagtgaaactaagcactcctctac |
355 |
Q |
| |
|
||||||||||| |||| || || ||| |||| |||||||||||||||||||||| |||| |||| |||| ||||||||||||| ||| || | |||||| |
|
|
| T |
31466548 |
taagctctctaatgacttcaaccatactcatcctttcttttggtgattccattgaacaaccaagtgcaatactaaaaagtgaaattaaacatttctctac |
31466647 |
T |
|
| Q |
356 |
a |
356 |
Q |
| |
|
| |
|
|
| T |
31466648 |
a |
31466648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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