View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16815_low_70 (Length: 254)
Name: NF16815_low_70
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16815_low_70 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: scaffold0019 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 139621 - 139385
Alignment:
| Q |
1 |
catgcaatccaaaaccaaatccaattgaccaacccttcagacaaccttttaaaccaagagaagatggctcaatgtgaattaaacacagctttagcgaggc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
139621 |
catgcaatccaaaaccaaatccaattgaccaacccttcagacaaccttttaaaccaagagaagatggctcggtgtgaattaaacacagctttagcgaggc |
139522 |
T |
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| Q |
101 |
aagagtgtttttggcaggaaaaagctagattatcttggcacttagagggtgataggaatacttcnnnnnnnncatagaatttcaaaaattaagtgtaaaa |
200 |
Q |
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| T |
139521 |
aagagtgtttttggctggaaaaagctagattatcttggcacttagagggtgataggaatacttc-tttttttcatagaatttcaaaaattaagtgtaaaa |
139423 |
T |
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| Q |
201 |
ctaaactcataaatacactaagagttggagagaatatt |
238 |
Q |
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| T |
139422 |
ctaaactcataaatacactgagagttgaagagaatatt |
139385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 3565540 - 3565304
Alignment:
| Q |
1 |
catgcaatccaaaaccaaatccaattgaccaacccttcagacaaccttttaaaccaagagaagatggctcaatgtgaattaaacacagctttagcgaggc |
100 |
Q |
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||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3565540 |
catgcaatccaaaactaaatcca-ttgatcaacccttcagacaaccttttaaaccaagagaagatggctcagtgtgaattaaacacagctttagcgaggc |
3565442 |
T |
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| Q |
101 |
aagagtgtttttggcaggaaaaagctagattatcttggcac-ttagagggtgataggaatacttcnnnnnnnncatagaatttcaaaaattaagtgtaaa |
199 |
Q |
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| T |
3565441 |
aagagtgtttttggcaggaaaaagctagattatcttggcactttagagggtgacaggaatacttc-tttttttcatagaatttcaaaaattaagtgtaaa |
3565343 |
T |
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| Q |
200 |
actaaactcataaatacactaagagttggagagaatatt |
238 |
Q |
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|||||||||||||||||||| |||||||||||||||||| |
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| T |
3565342 |
actaaactcataaatacactgagagttggagagaatatt |
3565304 |
T |
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