View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16815_low_71 (Length: 250)

Name: NF16815_low_71
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16815_low_71
NF16815_low_71
[»] chr4 (7 HSPs)
chr4 (8-233)||(20358986-20359208)
chr4 (88-232)||(1994024-1994165)
chr4 (88-232)||(56559035-56559176)
chr4 (88-193)||(9404162-9404264)
chr4 (8-75)||(1993926-1993993)
chr4 (11-75)||(56559207-56559271)
chr4 (8-75)||(9404295-9404360)
[»] scaffold0014 (1 HSPs)
scaffold0014 (8-232)||(8586-8806)
[»] chr3 (4 HSPs)
chr3 (88-232)||(8961532-8961674)
chr3 (88-232)||(3299377-3299518)
chr3 (8-75)||(8961434-8961501)
chr3 (8-75)||(3299279-3299346)
[»] chr8 (2 HSPs)
chr8 (88-232)||(44614408-44614549)
chr8 (11-75)||(44614313-44614377)
[»] chr7 (2 HSPs)
chr7 (88-232)||(22249155-22249296)
chr7 (8-75)||(22249057-22249124)
[»] chr2 (2 HSPs)
chr2 (88-165)||(20266240-20266317)
chr2 (8-75)||(20266142-20266209)


Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 233
Target Start/End: Original strand, 20358986 - 20359208
Alignment:
Q  8 cgaagaatattagacacatggattatatgtgaacttacaacttttataatacaaatattagttttattnnnnnnngttttttcttacaagtcacatttta 107  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||    
T  20358986 cgaagaatattagacacatgggttatatgtgaacttacaacttttataatacaaatattagttttattaaagaaagttttttcttacaagtcacatttta 20359085  T
Q  108 aagaataatccaaattcattttcatttcacgtgattttgctaataattgatgtataatatgccaaatgttgtttaatagaaggaatcattagggaagaaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  20359086 aagaataatccaaattcattttcatttcacgtgattttgctaataattgatgtataatatgccaaa---tgtttaatagaaggaatcattagggaagaaa 20359182  T
Q  208 atatagttattttgtttcaattattt 233  Q
    ||||||||||||||||||||||||||    
T  20359183 atatagttattttgtttcaattattt 20359208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 88 - 232
Target Start/End: Original strand, 1994024 - 1994165
Alignment:
Q  88 ttcttacaagtcacattttaaagaataatccaaattcattttcatttcacgtgattttgctaataattgatgtataatatgccaaatgttgtttaataga 187  Q
    |||||||| ||||  ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||   | |||||||||||    
T  1994024 ttcttacaggtcaagttttagagaataatccaaattcatttccatttcacgtgattttgctaataattgatgtataatatgcca---gatgtttaataga 1994120  T
Q  188 aggaatcattagggaagaaaatatagttattttgtttcaattatt 232  Q
    |||||| ||||||||||||||||||||||||||||||||||||||    
T  1994121 aggaattattagggaagaaaatatagttattttgtttcaattatt 1994165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 88 - 232
Target Start/End: Complemental strand, 56559176 - 56559035
Alignment:
Q  88 ttcttacaagtcacattttaaagaataatccaaattcattttcatttcacgtgattttgctaataattgatgtataatatgccaaatgttgtttaataga 187  Q
    |||||||| ||||  ||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||   | |||||||||||    
T  56559176 ttcttacatgtcatgttttagataataatccaaattcatttccatttcacgtgattttgctaataattgatgtataatatgcca---gatgtttaataga 56559080  T
Q  188 aggaatcattagggaagaaaatatagttattttgtttcaattatt 232  Q
    |||||| ||||||||||||||||||||||||||||||||||||||    
T  56559079 aggaattattagggaagaaaatatagttattttgtttcaattatt 56559035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 88 - 193
Target Start/End: Complemental strand, 9404264 - 9404162
Alignment:
Q  88 ttcttacaagtcacattttaaagaataatccaaattcattttcatttcacgtgattttgctaataattgatgtataatatgccaaatgttgtttaataga 187  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||    
T  9404264 ttcttacaagtcacgttttaaagaataatccaaattcatttccatttcacgtgattttgctaataattgatgtataatatgccaaa---tgtttaataga 9404168  T
Q  188 aggaat 193  Q
    ||||||    
T  9404167 aggaat 9404162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 1993926 - 1993993
Alignment:
Q  8 cgaagaatattagacacatggattatatgtgaacttacaacttttataatacaaatattagttttatt 75  Q
    |||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  1993926 cgaagaatattagatacatggattatatgtgtacttacaactcttataatacaaatattagttttatt 1993993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 56559271 - 56559207
Alignment:
Q  11 agaatattagacacatggattatatgtgaacttacaacttttataatacaaatattagttttatt 75  Q
    ||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  56559271 agaatattagatacatggattatatgtgtacttacaactcttataatacaaatattagttttatt 56559207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 9404360 - 9404295
Alignment:
Q  8 cgaagaatattagacacatggattatatgtgaacttacaacttttataatacaaatattagttttatt 75  Q
    |||||||||||||||||||||||||| |||  |||||||||| |||||||||||||||||||||||||    
T  9404360 cgaagaatattagacacatggattatgtgt--acttacaactcttataatacaaatattagttttatt 9404295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 8 - 232
Target Start/End: Complemental strand, 8806 - 8586
Alignment:
Q  8 cgaagaatattagacacatggattatatgtgaacttacaacttttataatacaaatattagttttattnnnnnnngttttttcttacaagtcacatttta 107  Q
    |||||||||||||| |||||||||||| ||| |||||||||| | ||||||||||||| |||||||||       ||||||||||||||||||| |||||    
T  8806 cgaagaatattagatacatggattatacgtgtacttacaactctcataatacaaatatgagttttattaaaaaa-gttttttcttacaagtcacgtttta 8708  T
Q  108 aagaataatccaaattcattttcatttcacgtgattttgctaataattgatgtataatatgccaaatgttgtttaatagaaggaatcattagggaagaaa 207  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||   ||||||||||||||||| |||||| || |||    
T  8707 aagaataatccaaattcatttccatttcacatgattttgctaataattgatgtataatatgccaaa---tgtttaatagaaggaattattaggaaataaa 8611  T
Q  208 atatagttattttgtttcaattatt 232  Q
    |||||||||||||||||||||||||    
T  8610 atatagttattttgtttcaattatt 8586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 6e-58; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 88 - 232
Target Start/End: Original strand, 8961532 - 8961674
Alignment:
Q  88 ttcttacaagtcacattttaaagaataatccaaattcattttcatttcacgtgattttgctaataattgatgtataatatgccaaatgttgtttaataga 187  Q
    |||||||||||||| ||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||    
T  8961532 ttcttacaagtcacgttttagagaataatccaaattcatttccatttcacatgattttgctaataattgatgtataatatgccaaatgt--tttaataga 8961629  T
Q  188 aggaatcattagggaagaaaatatagttattttgtttcaattatt 232  Q
    |||||| ||||||||||||||||||||||||||||||||||||||    
T  8961630 aggaattattagggaagaaaatatagttattttgtttcaattatt 8961674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 88 - 232
Target Start/End: Original strand, 3299377 - 3299518
Alignment:
Q  88 ttcttacaagtcacattttaaagaataatccaaattcattttcatttcacgtgattttgctaataattgatgtataatatgccaaatgttgtttaataga 187  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||   |||||||||||    
T  3299377 ttcttacaagtcacgttttaaagaataatccaaattcattttcatttcacatgattttgctaataattgatgtattatataccaaa---tgtttaataga 3299473  T
Q  188 aggaatcattagggaagaaaatatagttattttgtttcaattatt 232  Q
    |||||| |||| |||||||||||||||||||||||||||||||||    
T  3299474 aggaattattatggaagaaaatatagttattttgtttcaattatt 3299518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 8961434 - 8961501
Alignment:
Q  8 cgaagaatattagacacatggattatatgtgaacttacaacttttataatacaaatattagttttatt 75  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  8961434 cgaagaatattagacacatggattatatgtgtacttacaactcttataatacaaatattagttttatt 8961501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 3299279 - 3299346
Alignment:
Q  8 cgaagaatattagacacatggattatatgtgaacttacaacttttataatacaaatattagttttatt 75  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||    
T  3299279 cgaagaatattagacacatggattatatgtgtacttacaactcttataatacaaatattatttttatt 3299346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 88 - 232
Target Start/End: Original strand, 44614408 - 44614549
Alignment:
Q  88 ttcttacaagtcacattttaaagaataatccaaattcattttcatttcacgtgattttgctaataattgatgtataatatgccaaatgttgtttaataga 187  Q
    |||||||||||||| ||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||   | |||||||||||    
T  44614408 ttcttacaagtcacgttttagaaaataatccaaattcatttccatttcacgtgattttgctaataattgatgtataatatgcca---gatgtttaataga 44614504  T
Q  188 aggaatcattagggaagaaaatatagttattttgtttcaattatt 232  Q
    |||||| ||||||||||||||||||||||||||||||||||||||    
T  44614505 aggaattattagggaagaaaatatagttattttgtttcaattatt 44614549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 44614313 - 44614377
Alignment:
Q  11 agaatattagacacatggattatatgtgaacttacaacttttataatacaaatattagttttatt 75  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  44614313 agaatattagacacatggattatatgtgtacttacaactcttataatacaaatattagttttatt 44614377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 88 - 232
Target Start/End: Original strand, 22249155 - 22249296
Alignment:
Q  88 ttcttacaagtcacattttaaagaataatccaaattcattttcatttcacgtgattttgctaataattgatgtataatatgccaaatgttgtttaataga 187  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||  |||| |||||   |||||||||||    
T  22249155 ttcttacaagtcacgttttaaagaataatccaaattcattttcattttacgtgattttgctaatagttgatgtaatatataccaaa---tgtttaataga 22249251  T
Q  188 aggaatcattagggaagaaaatatagttattttgtttcaattatt 232  Q
    |||||| |||||| |||||||||||||||||||||||||||||||    
T  22249252 aggaattattaggaaagaaaatatagttattttgtttcaattatt 22249296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 22249057 - 22249124
Alignment:
Q  8 cgaagaatattagacacatggattatatgtgaacttacaacttttataatacaaatattagttttatt 75  Q
    ||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||    
T  22249057 cgaagaatattagacacatggattatatgtgtacttgcaactcttataatacaaatattagttttatt 22249124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 88 - 165
Target Start/End: Original strand, 20266240 - 20266317
Alignment:
Q  88 ttcttacaagtcacattttaaagaataatccaaattcattttcatttcacgtgattttgctaataattgatgtataat 165  Q
    |||| ||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  20266240 ttctcacaagtcacgttttaaagaataatccaaattcatttccatttcacatgattttgctaataattgatgtataat 20266317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 20266142 - 20266209
Alignment:
Q  8 cgaagaatattagacacatggattatatgtgaacttacaacttttataatacaaatattagttttatt 75  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||    
T  20266142 cgaagaatattagacacatggattatatgtgtacttacaactcttataatacaaatgttagttttatt 20266209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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