View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16815_low_72 (Length: 250)

Name: NF16815_low_72
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16815_low_72
NF16815_low_72
[»] chr3 (3 HSPs)
chr3 (11-228)||(29069662-29069880)
chr3 (187-233)||(11413601-11413647)
chr3 (170-233)||(11413251-11413314)
[»] chr1 (2 HSPs)
chr1 (186-233)||(35819805-35819853)
chr1 (186-233)||(23395133-23395180)
[»] scaffold0007 (2 HSPs)
scaffold0007 (186-227)||(201667-201709)
scaffold0007 (170-233)||(201310-201375)
[»] chr8 (1 HSPs)
chr8 (170-233)||(30491825-30491890)
[»] chr7 (1 HSPs)
chr7 (186-233)||(2407346-2407394)
[»] chr6 (1 HSPs)
chr6 (170-233)||(8382076-8382140)
[»] chr5 (1 HSPs)
chr5 (170-232)||(16644978-16645042)
[»] chr2 (1 HSPs)
chr2 (169-213)||(43519272-43519316)


Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 11 - 228
Target Start/End: Original strand, 29069662 - 29069880
Alignment:
Q  11 caaaggtgtcaacatgtatcgtgtaaaaattgtatattcagaaaatgaacttatatgagttgagaagaattctagaaatgacaagagttatatctataat 110  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  29069662 caaaagtgtcaacatgtatcgtgtaaaaattgtatattcagaaaatgaacttttatgagttgagaagaattctagaaatgacaagagttatatctataat 29069761  T
Q  111 ggtaaatgtagttaaatttgcttattttgagactacaaatgagatgataaatatttgttttaattgcaactttgacccctaagtatcacaatcttacgat 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||    
T  29069762 ggtaaatgtagttaaatttgcttattttgagactacaaatgagatgataaatatttgtgttaattgcaactttgactcctaactatcacaatcttacgat 29069861  T
Q  211 ttt-accccctataaaaaa 228  Q
    ||| |||||||||||||||    
T  29069862 tttgaccccctataaaaaa 29069880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 11413647 - 11413601
Alignment:
Q  187 ccctaagtatcacaatcttacgattttaccccctataaaaaacaata 233  Q
    ||||||||||||||||||| |||||| ||||||||||||||| ||||    
T  11413647 ccctaagtatcacaatcttgcgatttgaccccctataaaaaataata 11413601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 233
Target Start/End: Original strand, 11413251 - 11413314
Alignment:
Q  170 ttaattgcaactttgacccctaagtatcacaatcttacgattttaccccctataaaaaacaata 233  Q
    |||||||||  |||| |||||||||||||||||||| |||||||  ||| | ||||||||||||    
T  11413251 ttaattgcagttttggcccctaagtatcacaatcttgcgattttttcccatttaaaaaacaata 11413314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 233
Target Start/End: Original strand, 35819805 - 35819853
Alignment:
Q  186 cccctaagtatcacaatcttacgattttacc-ccctataaaaaacaata 233  Q
    |||||||||||||||||||| ||||||| || |||||||||||||||||    
T  35819805 cccctaagtatcacaatcttgcgattttgccaccctataaaaaacaata 35819853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 233
Target Start/End: Original strand, 23395133 - 23395180
Alignment:
Q  186 cccctaagtatcacaatcttacgattttaccccctataaaaaacaata 233  Q
    |||||||||||||||||||| |||||||  ||||||||| ||||||||    
T  23395133 cccctaagtatcacaatcttgcgattttgacccctataagaaacaata 23395180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 201709 - 201667
Alignment:
Q  186 cccctaagtatcacaatcttacgatttta-ccccctataaaaa 227  Q
    ||||||||||||||||||||| ||||||| |||||||||||||    
T  201709 cccctaagtatcacaatcttatgattttagccccctataaaaa 201667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 233
Target Start/End: Original strand, 201310 - 201375
Alignment:
Q  170 ttaattgcaactttgacccc-taagtatcacaatcttacgatttt-accccctataaaaaacaata 233  Q
    |||||||||  ||||||||| |||||||||||||||| ||||||| |||| || ||||||||||||    
T  201310 ttaattgcagttttgaccccctaagtatcacaatcttgcgattttgaccctctgtaaaaaacaata 201375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 233
Target Start/End: Complemental strand, 30491890 - 30491825
Alignment:
Q  170 ttaattgcaactttgacccc-taagtatcacaatcttacgatttt-accccctataaaaaacaata 233  Q
    |||||||||  ||||||||| ||||||||| |||||| ||||||| |||| |||||||||||||||    
T  30491890 ttaattgcagttttgaccccataagtatcataatcttgcgattttgaccctctataaaaaacaata 30491825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 233
Target Start/End: Original strand, 2407346 - 2407394
Alignment:
Q  186 cccctaagtatcacaatcttacgatttt-accccctataaaaaacaata 233  Q
    |||||||||||||||||||| |||||||   ||||||||||||||||||    
T  2407346 cccctaagtatcacaatcttgcgattttggtcccctataaaaaacaata 2407394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 233
Target Start/End: Original strand, 8382076 - 8382140
Alignment:
Q  170 ttaattgcaactttgacccctaagtatcacaatcttacgatttt-accccctataaaaaacaata 233  Q
    |||||||||  |||| |||||||||||||||||||| | ||||| | ||| ||||||||||||||    
T  8382076 ttaattgcatttttggcccctaagtatcacaatcttgcaattttgatcccttataaaaaacaata 8382140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 16644978 - 16645042
Alignment:
Q  170 ttaattgcaactttgacccct-aagtatcacaatcttacgatttta-ccccctataaaaaacaat 232  Q
    |||||||||  |||||||||| |||||||||||| || ||||||||  |||||||||||||||||    
T  16644978 ttaattgcagttttgaccccttaagtatcacaattttgcgattttagtcccctataaaaaacaat 16645042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 43519272 - 43519316
Alignment:
Q  169 tttaattgcaactttgacccctaagtatcacaatcttacgatttt 213  Q
    ||||||||||  ||||||||  |||||||||||||||||||||||    
T  43519272 tttaattgcagttttgaccctcaagtatcacaatcttacgatttt 43519316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University