View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16815_low_78 (Length: 239)
Name: NF16815_low_78
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16815_low_78 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 66 - 214
Target Start/End: Original strand, 24090932 - 24091080
Alignment:
| Q |
66 |
ctatctcattaaaatttcggtcaagaagtgcaagctggagtctaagtccctgcaatcttcctcctgttgcaaatgcaatagatggtggcacgtgaactcg |
165 |
Q |
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| T |
24090932 |
ctatctcattaaaatttcggtcaagaagtgcaagctggagtctaagtccctgcaatcttcctcctgttgcaaatgcaatagatggtggcacgtgaactcg |
24091031 |
T |
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| Q |
166 |
taattcagcatggccaagtaacccagaggctgctgcagcatgagccctg |
214 |
Q |
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| T |
24091032 |
taattcagcatggccaagtaacccagaggctgctgcagcatgagccctg |
24091080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 66 - 214
Target Start/End: Original strand, 24086870 - 24087018
Alignment:
| Q |
66 |
ctatctcattaaaatttcggtcaagaagtgcaagctggagtctaagtccctgcaatcttcctcctgttgcaaatgcaatagatggtggcacgtgaactcg |
165 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
24086870 |
ctatctcattaaaatctcggtcaagaagtgcaagctggagtctaagtccctgcaatcttcctcctgttgcaaatgcaatagatggtggcacgcgaactcg |
24086969 |
T |
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| Q |
166 |
taattcagcatggccaagtaacccagaggctgctgcagcatgagccctg |
214 |
Q |
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| T |
24086970 |
taattcagcatggccaagtaacccagaggctgctgcagcatgagccctg |
24087018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 36283973 - 36284015
Alignment:
| Q |
27 |
ttagtacttttagtaagcaatttccaactagatatggatctat |
69 |
Q |
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| T |
36283973 |
ttagcacttttagtaagcaatttccaactagatatggatctat |
36284015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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