View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16815_low_79 (Length: 238)
Name: NF16815_low_79
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16815_low_79 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 17753770 - 17753560
Alignment:
| Q |
19 |
caactaaccactctccatcgccactgaaacagggtgccttccagtgcactttcgtgattgtatcctgaaactcacggaacagagttaaacattttgatcc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
17753770 |
caactaaccactctccatcgccactgaaacagggtgccttccagtgcactttcgtgattgtatcttgaaactcacggaacagagttaaacattttgatcc |
17753671 |
T |
|
| Q |
119 |
tccagccttcaacttctcaacaccatttagatcactgaggttctcgttctcgttcagttcagctagtgctctaacttcatcttttggtggaagcagattt |
218 |
Q |
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| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17753670 |
tacagccttcaacttctcaacaccatttagatcaccgatgttctcgttctcgttcagttcagctagtgctctaacttcatcttttggtggaagcagattt |
17753571 |
T |
|
| Q |
219 |
tcatagattct |
229 |
Q |
| |
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||||||||||| |
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| T |
17753570 |
tcatagattct |
17753560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 17762757 - 17762547
Alignment:
| Q |
19 |
caactaaccactctccatcgccactgaaacagggtgccttccagtgcactttcgtgattgtatcctgaaactcacggaacagagttaaacattttgatcc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
17762757 |
caactaaccactctccatcgccactgaaacagggtgccttccagtgcactttcgtgattgtatcttgaaactcacggaacagagttaaacattttgatcc |
17762658 |
T |
|
| Q |
119 |
tccagccttcaacttctcaacaccatttagatcactgaggttctcgttctcgttcagttcagctagtgctctaacttcatcttttggtggaagcagattt |
218 |
Q |
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| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17762657 |
tacagccttcaacttctcaacaccatttagatcaccgatgttctcgttctcgttcagttcagctagtgctctaacttcatcttttggtggaagcagattt |
17762558 |
T |
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| Q |
219 |
tcatagattct |
229 |
Q |
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||||||||||| |
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| T |
17762557 |
tcatagattct |
17762547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 26 - 229
Target Start/End: Complemental strand, 17739609 - 17739412
Alignment:
| Q |
26 |
ccactctccatcgccactgaaacagggtgccttccagtgcactttcgtgattgtatcctgaaactcacggaacagagttaaacattttgatcctccagcc |
125 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
17739609 |
ccactcaccatcaccactgaaacagggtgccttccagtgcaccttcgtgattgcatcttgaaactcacggaacaaagttaaacattttgatcctgcagcc |
17739510 |
T |
|
| Q |
126 |
ttcaacttctcaacaccatttagatcactgaggttctcgttctcgttcagttcagctagtgctctaacttcatcttttggtggaagcagattttcataga |
225 |
Q |
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||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
17739509 |
ttcaacttctctacaccatttagatcaccgaggttctc------gttcagttcagctagtgctctaacttcatcttttggcggaagcagattttcataga |
17739416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 26 - 226
Target Start/End: Complemental strand, 15735714 - 15735520
Alignment:
| Q |
26 |
ccactctccatcgccactgaaacagggtgccttccagtgcactttcgtgattgtatcctgaaactcacggaacagagttaaacattttgatcctccagcc |
125 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
15735714 |
ccactcaccatcaccactgaaacagggtgccttccagtgcaccttcgtgattgcatcttgaaactcacggaacaaagttaaacattttgatcctgcagcc |
15735615 |
T |
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| Q |
126 |
ttcaacttctcaacaccatttagatcactgaggttctcgttctcgttcagttcagctagtgctctaacttcatcttttggtggaagcagattttcataga |
225 |
Q |
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||||||||||||||||| ||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
15735614 |
ttcaacttctcaacaccgtttagatcactgaggttct------cgttaagttcggctagtgctctaacttcatcttttggcggaagaagattttcataga |
15735521 |
T |
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