View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16815_low_8 (Length: 594)
Name: NF16815_low_8
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16815_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 456; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 13 - 520
Target Start/End: Original strand, 36430079 - 36430587
Alignment:
| Q |
13 |
aaatgaactaacagaaactaccatcagtgctcgctgaaagctacaaatatgttaaattttttggttcatacaagtatcaaatatgtgtagtcacgctgtg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36430079 |
aaatgaactaacagaaactaccatcagtgctcgctgaaagctacaaatatgttaaattttttggttcatacaagtatcaaatatgtgtagtcacgctgtg |
36430178 |
T |
|
| Q |
113 |
gtattgtaagatgaacagtttgagtatgtccatttcaataaacttattagttgaaattggattttaacgcaatgttttagaagtggtctttaacagaata |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36430179 |
gtattgtaagatgaacagtttgagtatgtccatttcaataaacttattagttgaaattggattttaacgcaatgttttagaagtggtctttaacagaata |
36430278 |
T |
|
| Q |
213 |
agataatcaactaaccatgtatgtagtcacaagtttttgttttattagttggaattggtatttgacacaatgctttagcattggattgataaatttaagg |
312 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36430279 |
agataatcaactaaccatgtatgtagtcacatgtttttgttttattagttggaattggtatttgacacaatgctttagcattggattgataaatttaagg |
36430378 |
T |
|
| Q |
313 |
taacgtataatccagtcaaaaaatgtaattgatataaatttcagggttaagtatatttttagtccatgaaaaatttcaatatttcnnnnnnngtctctgt |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||| |||||| |||||||| |
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| T |
36430379 |
taacgtataatccagtcaaaaaatgtaattgatataaatttcagggttaagtatatttttagttcataaaaattttcattatttcattttttgtctctgt |
36430478 |
T |
|
| Q |
413 |
agaacaaaatc-attttaatccctataaaattattttgcaagcagttagctcttgctgaaacgaaacacatttatttatccctgtttaattatctcttaa |
511 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36430479 |
agaacaaaatcaattttaatccctataaaattattttgcaagcagttagctcttgctgaaacgaaacacatttatatatccctgtttaattatctcttaa |
36430578 |
T |
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| Q |
512 |
cttttaaaa |
520 |
Q |
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||||||||| |
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| T |
36430579 |
cttttaaaa |
36430587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 36420126 - 36420169
Alignment:
| Q |
13 |
aaatgaactaacagaaactaccatcagtgctcgctgaaagctac |
56 |
Q |
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||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
36420126 |
aaatgaactaacagaaactaccatcagcgctcgctgaaaactac |
36420169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 36436556 - 36436599
Alignment:
| Q |
13 |
aaatgaactaacagaaactaccatcagtgctcgctgaaagctac |
56 |
Q |
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| T |
36436556 |
aaatgaattaacagaaactaccatcagtgctcgctaaaagctac |
36436599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 36377052 - 36377092
Alignment:
| Q |
13 |
aaatgaactaacagaaactaccatcagtgctcgctgaaagc |
53 |
Q |
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||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
36377052 |
aaatgaattaacagaaactaccatcagtgctcgctaaaagc |
36377092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 312
Target Start/End: Original strand, 36371482 - 36371541
Alignment:
| Q |
254 |
ttattagttggaattggtatttgacacaatgctttagca-ttggattgataaatttaagg |
312 |
Q |
| |
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|||| ||||||||||||| |||||||||||||||||||| ||| ||||| ||||||||| |
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| T |
36371482 |
ttatcagttggaattggtctttgacacaatgctttagcagttgttttgatgaatttaagg |
36371541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 539 - 574
Target Start/End: Original strand, 36430608 - 36430643
Alignment:
| Q |
539 |
gcaattatatttagataattataaaaagtttttcca |
574 |
Q |
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||||||||||||||| |||||||||||||||||||| |
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| T |
36430608 |
gcaattatatttagaaaattataaaaagtttttcca |
36430643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 36400623 - 36400684
Alignment:
| Q |
102 |
gtcacgctgtggtattgtaagatgaacagtttgagtatg--tccatttcaataaacttatta |
161 |
Q |
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||||| |||||||||||||| ||||| | |||||||||| ||||||||||||| ||||||| |
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| T |
36400623 |
gtcactctgtggtattgtaaaatgaataatttgagtatgtctccatttcaataagcttatta |
36400684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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