View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16815_low_83 (Length: 228)
Name: NF16815_low_83
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16815_low_83 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 14 - 211
Target Start/End: Complemental strand, 49886101 - 49885908
Alignment:
| Q |
14 |
caatcttcaccaatgaaggctgcatgcacgaaaataaatatataagtatcacaattattaacatcttgctgttaaaatagtttttgttgtagtgcaaata |
113 |
Q |
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| T |
49886101 |
caatcttcaccaatgaaggctgca----cgtaaataaatatataagtatcacaattattaacatcttgctgttaaaatagtttttgttgtagtgcaaata |
49886006 |
T |
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| Q |
114 |
agtaccttctttttacaaatatcatcacattcatactcctggtcaataatgattggatttttaacatttgtcatgttaatgttagtgaaaaatatctc |
211 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49886005 |
agtaccttctttttacaaatatcatcacattcatattcctggtcaataatgattggatttttaacatttgtcatgttaatgttagtgaaaaatatctc |
49885908 |
T |
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