View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16815_low_89 (Length: 201)
Name: NF16815_low_89
Description: NF16815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16815_low_89 |
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| [»] scaffold0022 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 3e-90; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 11 - 186
Target Start/End: Complemental strand, 10642419 - 10642244
Alignment:
| Q |
11 |
gaagaatattgctaacaaaacaatcaaaatagagtttacaagcaagtcaaactatttaaacaggtatagcactacaagtctgcttctagcttttctactt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10642419 |
gaagaatattgctaacaaaacaatcaaaatagagtttacaagcaagtcaaactatttaaacaggtatagcactacaagtctgcttctagcttttctactt |
10642320 |
T |
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| Q |
111 |
cagctgaaaaggctaaagatagagatgaacaacttacctcaccaatactctgatcaaccccttttgcatgctcctg |
186 |
Q |
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| T |
10642319 |
cagctgaaaaggctaaaaatagagatgaacaacttacctcaccgatactctgatcaaccccttttgcatgctcctg |
10642244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 32713410 - 32713560
Alignment:
| Q |
11 |
gaagaatattgctaacaaaacaatcaaaatagagtttacaagcaagtcaaactatttaaacaggtatagcactacaagtctgcttctagcttttctactt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32713410 |
gaagaatattgctaacaaaacaatcaaaatagagtttacaagcaagtcaaactatttaaacaggtatagcactacaagtctgcttctagcttttctactt |
32713509 |
T |
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| Q |
111 |
cagctgaaaaggctaaagatagagatgaacaacttacctcaccaatactct |
161 |
Q |
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| T |
32713510 |
cagctgaaaaggctaaaaatagagatgaacaacttacctcaccaatactct |
32713560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 161
Target Start/End: Complemental strand, 10642226 - 10642187
Alignment:
| Q |
122 |
gctaaagatagagatgaacaacttacctcaccaatactct |
161 |
Q |
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| T |
10642226 |
gctaaaaatagagatgaacaacttacctcaccaatactct |
10642187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 164; Significance: 7e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 11 - 186
Target Start/End: Original strand, 23924208 - 23924383
Alignment:
| Q |
11 |
gaagaatattgctaacaaaacaatcaaaatagagtttacaagcaagtcaaactatttaaacaggtatagcactacaagtctgcttctagcttttctactt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
23924208 |
gaagaatattgctaacaaaacaatcaaaatagagtttacaagcaagtcaaactatttaaacaggtataacactacaagtcttcttctagcttttctactt |
23924307 |
T |
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| Q |
111 |
cagctgaaaaggctaaagatagagatgaacaacttacctcaccaatactctgatcaaccccttttgcatgctcctg |
186 |
Q |
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| T |
23924308 |
cagctgaaaaggctaaaaatagagatgaacaacttacctcaccaatactctgatcaaccccttttgcatgctcctg |
23924383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 24 - 120
Target Start/End: Complemental strand, 89087 - 88991
Alignment:
| Q |
24 |
aacaaaacaatcaaaatagagtttacaagcaagtcaaactatttaaacaggtatagcactacaagtctgcttctagcttttctacttcagctgaaaa |
120 |
Q |
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|||||||||||||||| | |||||| || ||||||||| || |||||| ||||||||||| ||||| ||||||||||||||| |||| ||||||| |
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| T |
89087 |
aacaaaacaatcaaaacacagtttagaacacagtcaaactgttaaaacagttatagcactacgagtctacttctagcttttctatttcacctgaaaa |
88991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 185
Target Start/End: Complemental strand, 88941 - 88909
Alignment:
| Q |
153 |
caatactctgatcaaccccttttgcatgctcct |
185 |
Q |
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| T |
88941 |
caatactcttatcaaccccttttgcatgctcct |
88909 |
T |
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