View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16816_high_11 (Length: 333)
Name: NF16816_high_11
Description: NF16816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16816_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 65 - 329
Target Start/End: Complemental strand, 34550793 - 34550530
Alignment:
| Q |
65 |
attccttattgattatataatccatttacacacctgccaaatatgcagaaccaaattaaagggcagattaaaagacaaagtaaaagacnnnnnnntggaa |
164 |
Q |
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| T |
34550793 |
attccttattgattatataatccatttacacacctgccaaatatgcagaaccaaattaaagggcagattcaa-gacaaagtaaaagacaaaaaaatggaa |
34550695 |
T |
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| Q |
165 |
caagtcaatttcaaagtcattcatacacaaatnnnnnnnnttgtcaaagagtttacaacacttgaagttgaaaaaatcaaacttgttacaaattacaatg |
264 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34550694 |
caagtcaatttcaaagtcattcatacacaaataaaaaaaattgtcaaagagtttacaacacttgaagttgaaaaaatcaaacttgttacaaattacaatg |
34550595 |
T |
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| Q |
265 |
acatcactgtgatgaaaattgaaataaacaaaacaacaaaacaagttggatcagaataatctacc |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
34550594 |
acatcactgtgatgaaaattgaaataaacaaaacaacaaaacatgttggatcagaataatttacc |
34550530 |
T |
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