View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16816_high_13 (Length: 294)
Name: NF16816_high_13
Description: NF16816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16816_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 44154746 - 44154955
Alignment:
| Q |
1 |
taaacacgcacaaattgaactaagcgtcatgatagaaagaacattgttattaataaagtaagcacgcaaacgaaatcaatcagagagaacaatgatgata |
100 |
Q |
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| T |
44154746 |
taaacacgcacaaattgaactaatcgtcatgatagaaagaacattattattaataaattaagcacgcaaacgaaatcaatcagagagaacaatgatgata |
44154845 |
T |
|
| Q |
101 |
ccactgcgactgagaatctgtttctgctccctaagactcggattcaccattggaatttgaactacgaatatgttgttgcttctcacaaatattttgagtt |
200 |
Q |
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| T |
44154846 |
ccactgcgactgagaatctgtttcggctccctcagactcggattcaccattggaatttgaactacgaatatgttgttgcttctcacaaatattttgagtt |
44154945 |
T |
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| Q |
201 |
cgtgagaata |
210 |
Q |
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|||||||||| |
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| T |
44154946 |
cgtgagaata |
44154955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 40899501 - 40899565
Alignment:
| Q |
38 |
agaacattgttattaataaagtaagcacgcaaacgaaatcaatcagagagaacaatgatgatacc |
102 |
Q |
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|||||||| ||||||||||| ||||||||||| |||| |||||||||||||||||||| ||||| |
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| T |
40899501 |
agaacattattattaataaattaagcacgcaagtgaaaacaatcagagagaacaatgataatacc |
40899565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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