View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16816_high_2 (Length: 663)

Name: NF16816_high_2
Description: NF16816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16816_high_2
NF16816_high_2
[»] chr7 (5 HSPs)
chr7 (1-453)||(6080211-6080662)
chr7 (602-663)||(6080664-6080725)
chr7 (525-587)||(35011555-35011617)
chr7 (131-189)||(35011869-35011927)
chr7 (15-53)||(18371817-18371855)
[»] chr4 (3 HSPs)
chr4 (3-48)||(56338226-56338271)
chr4 (12-48)||(2274396-2274432)
chr4 (14-50)||(11384487-11384523)
[»] chr8 (2 HSPs)
chr8 (6-59)||(6133509-6133562)
chr8 (14-50)||(42127655-42127691)
[»] chr2 (2 HSPs)
chr2 (6-59)||(26379647-26379700)
chr2 (14-50)||(28239640-28239676)
[»] scaffold0912 (1 HSPs)
scaffold0912 (2-59)||(1854-1908)


Alignment Details
Target: chr7 (Bit Score: 427; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Original strand, 6080211 - 6080662
Alignment:
Q  1 tcaaaatattatcttcatcatcatacaaaattaacacaaatttaaacccaaaagttaaaaaagaa-tgcacatgttgtgaactgtgtgatagtgtttcca 99  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6080211 tcaaaatattatcttcatcatgatacaaaattaacacaaatttaaacccaaaagttaaaaaagaaatgcacatgttgtgaactgtgtgatagtgtttcca 6080310  T
Q  100 acgcttagccccgtcgcccttaccgccaccaagcttctccgatcaccgttgaggtacggcttttattcttaagcatcttattgtcaacaaattttcccaa 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6080311 acgcttagccccgtcgcccttaccgccaccaagcttctccgatcaccgttgaggtacggcttttattcttaagcatcttattgtcaacaaattttcccaa 6080410  T
Q  200 atccaatcccttaaactaatcgtattatgttcatttgcgacgccaagtaaatagtgataaagggtttatcaatattctaatctgcataatctaagtaacc 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6080411 atccaatcccttaaactaatcgtattatgttcatttgcgacgccaagtaaatagtgataaagggtttatcaatattctaatctgcataatctaagtaacc 6080510  T
Q  300 cttttcgttttgaatttgttctacttttttgaaatcagaggaatttgaactcaatatttccctatttcgctgcgtacactaaacctgtttgattaaatgc 399  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6080511 cttttcgttttgaatttgttctac--ttttgaaatcagaggaatttgaactcaatatttccctatttcgctgcgtacactaaacctgtttgattaaatgc 6080608  T
Q  400 cttaatgtgagtcatcattgttcctttgtttttcactctgcaaatcttcataat 453  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6080609 cttaatgttagtcatcattgttcctttgtttttcactctgcaaatcttcataat 6080662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 602 - 663
Target Start/End: Original strand, 6080664 - 6080725
Alignment:
Q  602 ctaaaaattcaatatttatgtgtttaagttttgggtttaaatttgggtttatatccttgttt 663  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6080664 ctaaaaattcaatatttatgtgtttaagttttgggtttaaatttgggtttatatccttgttt 6080725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 525 - 587
Target Start/End: Complemental strand, 35011617 - 35011555
Alignment:
Q  525 acctcgcttttttaatttcacattctgtttaaatcattacagtttttcttttcatgatcttat 587  Q
    |||||||||||||||||  ||||| |||||||||||||||||||||| |||||||||||||||    
T  35011617 acctcgcttttttaattatacattatgtttaaatcattacagtttttgttttcatgatcttat 35011555  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 189
Target Start/End: Complemental strand, 35011927 - 35011869
Alignment:
Q  131 agcttctccgatcaccgttgaggtacggcttttattcttaagcatcttattgtcaacaa 189  Q
    ||||||||||| |||||||||||||||||||||| || ||||||||| ||| |||||||    
T  35011927 agcttctccgaccaccgttgaggtacggcttttaatcctaagcatctcattctcaacaa 35011869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 18371817 - 18371855
Alignment:
Q  15 tcatcatcatacaaaattaacacaaatttaaacccaaaa 53  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  18371817 tcatcatcatccaacattaacacaaatttaaacccaaaa 18371855  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 56338271 - 56338226
Alignment:
Q  3 aaaatattatcttcatcatcatacaaaattaacacaaatttaaacc 48  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  56338271 aaaatattatcttcatcatcatataaaattaacacaaatttaaacc 56338226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 2274396 - 2274432
Alignment:
Q  12 tcttcatcatcatacaaaattaacacaaatttaaacc 48  Q
    ||||||||||||| |||||||||||||||||||||||    
T  2274396 tcttcatcatcatccaaaattaacacaaatttaaacc 2274432  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 11384487 - 11384523
Alignment:
Q  14 ttcatcatcatacaaaattaacacaaatttaaaccca 50  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  11384487 ttcatcatcatccaaaattaaaacaaatttaaaccca 11384523  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 6133562 - 6133509
Alignment:
Q  6 atattatcttcatcatcatacaaaattaacacaaatttaaacccaaaagttaaa 59  Q
    ||||||||||||||||||| |||||||||| ||||| ||||||||||| |||||    
T  6133562 atattatcttcatcatcatccaaaattaactcaaatataaacccaaaacttaaa 6133509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 42127655 - 42127691
Alignment:
Q  14 ttcatcatcatacaaaattaacacaaatttaaaccca 50  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  42127655 ttcatcatcatccaaaattaaaacaaatttaaaccca 42127691  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 26379647 - 26379700
Alignment:
Q  6 atattatcttcatcatcatacaaaattaacacaaatttaaacccaaaagttaaa 59  Q
    ||||||||||||||||||| |||||||||| ||| | ||||||||||| |||||    
T  26379647 atattatcttcatcatcatccaaaattaactcaagtataaacccaaaacttaaa 26379700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 28239640 - 28239676
Alignment:
Q  14 ttcatcatcatacaaaattaacacaaatttaaaccca 50  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  28239640 ttcatcatcatccaaaattaaaacaaatttaaaccca 28239676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0912 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0912
Description:

Target: scaffold0912; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 1854 - 1908
Alignment:
Q  2 caaaatattatcttcatcatcatacaaaattaacacaaatttaaacccaaaagttaaa 59  Q
    ||||||||| |||||||||||   |||||||||||||||||||||| ||||| |||||    
T  1854 caaaatattttcttcatcatc---caaaattaacacaaatttaaactcaaaacttaaa 1908  T

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