View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16816_high_4 (Length: 528)

Name: NF16816_high_4
Description: NF16816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16816_high_4
NF16816_high_4
[»] chr5 (5 HSPs)
chr5 (282-512)||(7088672-7088902)
chr5 (16-223)||(7088961-7089168)
chr5 (33-73)||(39424642-39424682)
chr5 (40-72)||(2039868-2039900)
chr5 (16-72)||(21049638-21049694)
[»] chr8 (1 HSPs)
chr8 (33-72)||(34201065-34201104)
[»] chr7 (1 HSPs)
chr7 (37-72)||(48438458-48438493)
[»] chr2 (2 HSPs)
chr2 (18-72)||(10254013-10254067)
chr2 (19-72)||(37497107-37497160)
[»] chr6 (1 HSPs)
chr6 (19-60)||(4859144-4859185)
[»] chr4 (1 HSPs)
chr4 (18-58)||(39272116-39272156)


Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 282 - 512
Target Start/End: Complemental strand, 7088902 - 7088672
Alignment:
Q  282 cattgaatttgcagtgaaacaaacctgttagttcgaatttcttaaattcaggaacaccgaataggatttttgaagaagaaaaaatatatagaatgtggtg 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7088902 cattgaatttgcagtgaaacaaacctgttagttcgaatttcttaaattcaggaacaccgaataggatttttgaagaagaaaaaatatatagaatgtggtg 7088803  T
Q  382 ataaaatggaatctagtggaaccaatgaaatgtgaatgaattggattgatttgtacagaaaaatggaatcttttgcatcgtcaagatgaagtcatagagg 481  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7088802 ataaaatggaatctagtggaaccaatgaaatgtgaatgaattggattgatttgtacagaaaaatggaatcttttgcatcgtcaagatgaagtcatagagg 7088703  T
Q  482 aatcaatcagagtacagtgatggatatagtg 512  Q
    |||||||||||||||||||||||||||||||    
T  7088702 aatcaatcagagtacagtgatggatatagtg 7088672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 16 - 223
Target Start/End: Complemental strand, 7089168 - 7088961
Alignment:
Q  16 cagacactaacatatcaacactaataataatttgagaaaatgacacgattcaatgtatgtgaactctgacatagataccaacacatgtcggataccagac 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  7089168 cagacactaacatatcaacactaataataatttgagaaaatgacaggattcaatgtatgtgaactctgacatagatgccaacacatgtcggataccagac 7089069  T
Q  116 acgttttcgatctgaagtgtagctgctactgactctacaagttttctaccagaatcaacaactaaaatataattcaacttcatcgctatgctttcaagaa 215  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  7089068 acgttttcgatcagaagtgtagctgctactgactctacaagttttctaccagaatcaacaactaaaatataattcaacttcaccgctatgctttcaagaa 7088969  T
Q  216 acattagc 223  Q
    || |||||    
T  7088968 actttagc 7088961  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 39424642 - 39424682
Alignment:
Q  33 acactaataataatttgagaaaatgacacgattcaatgtat 73  Q
    |||| ||||||||||||||||||||||| ||||||||||||    
T  39424642 acaccaataataatttgagaaaatgacatgattcaatgtat 39424682  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 2039900 - 2039868
Alignment:
Q  40 taataatttgagaaaatgacacgattcaatgta 72  Q
    ||||||||||||||||||||| |||||||||||    
T  2039900 taataatttgagaaaatgacatgattcaatgta 2039868  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 21049694 - 21049638
Alignment:
Q  16 cagacactaacatatcaacactaataataatttgagaaaatgacacgattcaatgta 72  Q
    ||||||||||||  || ||||||||||||||||| ||||||| ||| |||| |||||    
T  21049694 cagacactaacacgtcgacactaataataatttgcgaaaatggcacaattcgatgta 21049638  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 72
Target Start/End: Complemental strand, 34201104 - 34201065
Alignment:
Q  33 acactaataataatttgagaaaatgacacgattcaatgta 72  Q
    ||||||||||||||||||||||||||||  ||||||||||    
T  34201104 acactaataataatttgagaaaatgacataattcaatgta 34201065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 72
Target Start/End: Original strand, 48438458 - 48438493
Alignment:
Q  37 taataataatttgagaaaatgacacgattcaatgta 72  Q
    ||||||||||||| ||||||||||||||||||||||    
T  48438458 taataataatttgggaaaatgacacgattcaatgta 48438493  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 10254013 - 10254067
Alignment:
Q  18 gacactaacatatcaacactaataataatttgagaaaatgacacgattcaatgta 72  Q
    ||||||| || |||||||||||||||||||  |||||||||||  ||||||||||    
T  10254013 gacactaccacatcaacactaataataattgtagaaaatgacataattcaatgta 10254067  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 37497107 - 37497160
Alignment:
Q  19 acactaacatatcaacactaataataatttgagaaaatgacacgattcaatgta 72  Q
    ||||| ||| ||| ||||| ||||||||||||||||||| ||| ||||||||||    
T  37497107 acactgacacatcgacactgataataatttgagaaaatgccacaattcaatgta 37497160  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 4859185 - 4859144
Alignment:
Q  19 acactaacatatcaacactaataataatttgagaaaatgaca 60  Q
    |||||||||| || |||| |||||||||||||||||||||||    
T  4859185 acactaacatgtcgacaccaataataatttgagaaaatgaca 4859144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 39272156 - 39272116
Alignment:
Q  18 gacactaacatatcaacactaataataatttgagaaaatga 58  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  39272156 gacactaacatgtcaacaccaataataattcgagaaaatga 39272116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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