View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16816_high_9 (Length: 393)
Name: NF16816_high_9
Description: NF16816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16816_high_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 16)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 19 - 386
Target Start/End: Original strand, 41366222 - 41366589
Alignment:
| Q |
19 |
cattagagaagaagaggtgtcaaatcttgttaaatcaataactgcaagtgaaggatcagttgttaatctcactcaaatgattctctcattaacaattggg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41366222 |
cattagagaagaagaggtgtcaaatcttgttaaatcaataactgcaagtgaaggatcggttgttaatctcactcaaatgattctctcattaacaattggg |
41366321 |
T |
|
| Q |
119 |
atgacagcgcggacagcatttggaaaaaagaataaacaccaagaagtgtttaaatcagcaatgaaggaaatatttaagctattgggaggattttcttttg |
218 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41366322 |
atgacagcgcgggcagcatttggaaaaaagaataaacaccaagaagtgtttaaatcagcaatgaaggaaatatttaagctattgggaggattttcttttg |
41366421 |
T |
|
| Q |
219 |
cagatttgtatccttctattaaaattcttcaaatgttaagttggccaaggaaaaaacttgaaaaacttcatagagagactgatatgatattgcaagagat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41366422 |
cagatttgtatccttctattaaaattcttcaaatgttaagttggccaaggaaaaaacttgaaaaacttcatagagagactgatatgatattgcaagagat |
41366521 |
T |
|
| Q |
319 |
catcgatgatcacaaaagtagtcacaagaaagctgggaagaatgatgatctagtagatgttcttctca |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
41366522 |
catcgatgatcacaaaagtagtcacaagaaagctaggaagaatgatgatctagtagatgttcttctca |
41366589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 23 - 386
Target Start/End: Original strand, 41332046 - 41332409
Alignment:
| Q |
23 |
agagaagaagaggtgtcaaatcttgttaaatcaataactgcaagtgaaggatcagttgttaatctcactcaaatgattctctcattaacaattgggatga |
122 |
Q |
| |
|
|||||||| || ||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||| | |||| ||||| | |||| |||||| | |
|
|
| T |
41332046 |
agagaagatgaagtgacaaatcttgttaaatcaataactgcaagtgaaggatcggttgtaaatctcactcggaagattttctcaatgacaaatgggataa |
41332145 |
T |
|
| Q |
123 |
cagcgcggacagcatttggaaaaaagaataaacaccaagaagtgtttaaatcagcaatgaaggaaatatttaagctattgggaggattttcttttgcaga |
222 |
Q |
| |
|
|||||||| |||| ||||| |||| ||||| | ||||||| ||||| | |||||||||| || || |||| |||||| ||||||||| ||||||| |
|
|
| T |
41332146 |
cagcgcgggcagcttttgggaaaaggaatagaaaccaagatgtgttcatatcagcaatggagaaagtattggtgctattaggaggatttgaaattgcaga |
41332245 |
T |
|
| Q |
223 |
tttgtatccttctattaaaattcttcaaatgttaagttggccaaggaaaaaacttgaaaaacttcatagagagactgatatgatattgcaagagatcatc |
322 |
Q |
| |
|
||||||||||||||||||||| |||||| | ||| || | || ||| | |||||| ||||||||||| |||||||||| ||||||| |||||| |
|
|
| T |
41332246 |
tttgtatccttctattaaaatgcttcaatgcatgagtagggagaagaccaaaatggaaaaaattcatagagagcttgatatgataatgcaagacatcatc |
41332345 |
T |
|
| Q |
323 |
gatgatcacaaaagtagtcacaagaaagctgggaagaatgatgatctagtagatgttcttctca |
386 |
Q |
| |
|
|| ||||||| ||| | ||||||| |||| | || |||| |||||||||||||||||||||| |
|
|
| T |
41332346 |
gacgatcacagaagcattcacaaggaagcaagcaacgatgaagatctagtagatgttcttctca |
41332409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 23 - 386
Target Start/End: Original strand, 41328033 - 41328396
Alignment:
| Q |
23 |
agagaagaagaggtgtcaaatcttgttaaatcaataactgcaagtgaaggatcagttgttaatctcactcaaatgattctctcattaacaattgggatga |
122 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||| | |||| |||||| | |
|
|
| T |
41328033 |
agagaagatgaggtgtcaaaccttgttaaatcaataactgcaagtgaaggatcagttgttaatctcactcggaagattttctcaatgacaaatgggataa |
41328132 |
T |
|
| Q |
123 |
cagcgcggacagcatttggaaaaaagaataaacaccaagaagtgtttaaatcagcaatgaaggaaatatttaagctattgggaggattttcttttgcaga |
222 |
Q |
| |
|
|||||||| |||| ||||| |||| ||||| ||||||||| ||||| | | ||||| || || || || | |||||| ||| ||||| ||||||| |
|
|
| T |
41328133 |
cagcgcgggcagcttttgggaaaaggaatagacaccaagatgtgttcataccagcattggagaaagtagtggtgctattaggaagatttgaaattgcaga |
41328232 |
T |
|
| Q |
223 |
tttgtatccttctattaaaattcttcaaatgttaagttggccaaggaaaaaacttgaaaaacttcatagagagactgatatgatattgcaagagatcatc |
322 |
Q |
| |
|
||||||||||||||||||| | |||||| | | | | || | || ||| | ||||||||||||| ||||| |||||||||| ||||| |||||| |
|
|
| T |
41328233 |
tttgtatccttctattaaattgcttcaatggatgactagggagaagaccaaaatggaaaaacttcatacagagattgatatgatagcacaagacatcatc |
41328332 |
T |
|
| Q |
323 |
gatgatcacaaaagtagtcacaagaaagctgggaagaatgatgatctagtagatgttcttctca |
386 |
Q |
| |
|
|| ||||||| ||||| ||||||| |||| | || |||| |||||||||||||||||||||| |
|
|
| T |
41328333 |
gacgatcacagaagtattcacaaggaagcaagcaatgatgaagatctagtagatgttcttctca |
41328396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 23 - 386
Target Start/End: Original strand, 41316066 - 41316429
Alignment:
| Q |
23 |
agagaagaagaggtgtcaaatcttgttaaatcaataactgcaagtgaaggatcagttgttaatctcactcaaatgattctctcattaacaattgggatga |
122 |
Q |
| |
|
|||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| | ||| ||| |||||| | |
|
|
| T |
41316066 |
agagaagatgaagtgacaaatcttgttaaatcaataactgcaagtgaaggatcagttgttaatctcactcagaagattttgtcaacgacatatgggataa |
41316165 |
T |
|
| Q |
123 |
cagcgcggacagcatttggaaaaaagaataaacaccaagaagtgtttaaatcagcaatgaaggaaatatttaagctattgggaggattttcttttgcaga |
222 |
Q |
| |
|
||||||| | || ||||| |||| || ||||||||||||||||||| ||||||||| ||||| || | | |||||||| ||| | ||| || |
|
|
| T |
41316166 |
cagcgcgagcggcttttgggaaaaggagcaaacaccaagaagtgtttagatcagcaatagaggaagtagcaagtttgttgggaggcgtttgtattgtgga |
41316265 |
T |
|
| Q |
223 |
tttgtatccttctattaaaattcttcaaatgttaagttggccaaggaaaaaacttgaaaaacttcatagagagactgatatgatattgcaagagatcatc |
322 |
Q |
| |
|
||||| ||||||||||||| | |||||| || ||| | | | || ||| | ||||||||||| | |||| |||||||| ||||||||| |||||| |
|
|
| T |
41316266 |
tttgtttccttctattaaattgcttcaatgcttgagtagagcgaagaccaaaatggaaaaacttcacaaagagcttgatatgacattgcaagacatcatc |
41316365 |
T |
|
| Q |
323 |
gatgatcacaaaagtagtcacaagaaagctgggaagaatgatgatctagtagatgttcttctca |
386 |
Q |
| |
|
|| ||||||||||| | ||||||| ||| | || |||| |||||||||||||||||||||| |
|
|
| T |
41316366 |
gacgatcacaaaagcattcacaaggaagaaagcaatgatgaagatctagtagatgttcttctca |
41316429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 23 - 335
Target Start/End: Complemental strand, 31188825 - 31188513
Alignment:
| Q |
23 |
agagaagaagaggtgtcaaatcttgttaaatcaataactgcaagtgaaggatcagttgttaatctcactcaaatgattctctcattaacaattgggatga |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||| | |||| | | | | ||| ||||| | |
|
|
| T |
31188825 |
agagaagaagaggtgtcaaatcttgttaaatcaatatctgcaagtgaaggatcaattgttaatctcagtcataagatttttttaatgacatcagggataa |
31188726 |
T |
|
| Q |
123 |
cagcgcggacagcatttggaaaaaagaataaacaccaagaagtgtttaaatcagcaatgaaggaaatatttaagctattgggaggattttcttttgcaga |
222 |
Q |
| |
|
| | || |||| ||||| |||| || |||||||||||||| || ||||||||||| ||||| ||| || | |||||| ||||| | |||| || |
|
|
| T |
31188725 |
cgacacgagcagcgtttgggaaaaggagtaaacaccaagaagctttcaaatcagcaataaaggagatagctagtttgctgggagaattttgtattgctga |
31188626 |
T |
|
| Q |
223 |
tttgtatccttctattaaaattcttcaaatgttaagttggccaaggaaaaaacttgaaaaacttcatagagagactgatatgatattgcaagagatcatc |
322 |
Q |
| |
|
| ||||||||||| ||||||| ||||| | | ||| || | | || ||| ||||||| ||||||| ||||| |||||||||||||||||| |||||| |
|
|
| T |
31188625 |
tgtgtatccttctgttaaaatgtttcaatgggtgagtagggcgaagacgaaagttgaaaagcttcataaagagattgatatgatattgcaagatatcatc |
31188526 |
T |
|
| Q |
323 |
gatgatcacaaaa |
335 |
Q |
| |
|
| |||||| |||| |
|
|
| T |
31188525 |
gttgatcataaaa |
31188513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 23 - 386
Target Start/End: Original strand, 41324135 - 41324498
Alignment:
| Q |
23 |
agagaagaagaggtgtcaaatcttgttaaatcaataactgcaagtgaaggatcagttgttaatctcactcaaatgattctctcattaacaattgggatga |
122 |
Q |
| |
|
|||||||| || || |||||||||| || ||||||||||||||||||||||||| |||||||||||||||| | |||| ||||| | ||| |||||| | |
|
|
| T |
41324135 |
agagaagatgaagtatcaaatcttgctacatcaataactgcaagtgaaggatcaattgttaatctcactcataagattttctcaatgacatatgggataa |
41324234 |
T |
|
| Q |
123 |
cagcgcggacagcatttggaaaaaagaataaacaccaagaagtgtttaaatcagcaatgaaggaaatatttaagctattgggaggattttcttttgcaga |
222 |
Q |
| |
|
|| ||||| | || ||||| |||| || |||||||| || ||||||||||||| | |||||||| | | | |||||||| ||| | ||| || |
|
|
| T |
41324235 |
caacgcgggcggcttttggcaaaaggagcaaacaccagcaatcgtttaaatcagcagtagaggaaatagtaagtttgttgggaggcatttgtattgttga |
41324334 |
T |
|
| Q |
223 |
tttgtatccttctattaaaattcttcaaatgttaagt-tggccaaggaaaaaacttgaaaaacttcatagagagactgatatgatattgcaagagatcat |
321 |
Q |
| |
|
||||||||||||||||||| | |||||| | ||| ||| |||| |||| | ||||||||||| | ||||| |||||||||||||||||| || || |
|
|
| T |
41324335 |
tttgtatccttctattaaattgcttcaatgcgtgagtagggcgaaggccaaaa-tggaaaaacttcacaaagagattgatatgatattgcaagacattat |
41324433 |
T |
|
| Q |
322 |
cgatgatcacaaaagtagtcacaagaaagctgggaagaatgatgatctagtagatgttcttctca |
386 |
Q |
| |
|
||| ||||||||||| | ||||||| ||| | | || | || ||||||||||||||||||||| |
|
|
| T |
41324434 |
cgacgatcacaaaagcattcacaaggaagatagcaatgaagaatatctagtagatgttcttctca |
41324498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 23 - 335
Target Start/End: Complemental strand, 31178780 - 31178468
Alignment:
| Q |
23 |
agagaagaagaggtgtcaaatcttgttaaatcaataactgcaagtgaaggatcagttgttaatctcactcaaatgattctctcattaacaattgggatga |
122 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||| ||| || ||||| ||||||||||||| ||||||| ||| | |||| || || | ||| | ||| | |
|
|
| T |
31178780 |
agagaataagaggtgtcaaatcttattaaatcgatatctacaagtaaaggatcagttgtaaatctcagtcataagattttcgcaatgacatcggcgataa |
31178681 |
T |
|
| Q |
123 |
cagcgcggacagcatttggaaaaaagaataaacaccaagaagtgtttaaatcagcaatgaaggaaatatttaagctattgggaggattttcttttgcaga |
222 |
Q |
| |
|
| | || |||| ||||| |||| ||||||||||||| ||||||| |||||||||| ||||||||| | | |||||||||||| | |||| || |
|
|
| T |
31178680 |
cgacacgagcagcgtttgggaaaaggaataaacaccaacaagtgttccaatcagcaataaaggaaatagcgagtttgatgggaggattttgtattgctga |
31178581 |
T |
|
| Q |
223 |
tttgtatccttctattaaaattcttcaaatgttaagttggccaaggaaaaaacttgaaaaacttcatagagagactgatatgatattgcaagagatcatc |
322 |
Q |
| |
|
| ||||||||||||||||||| |||||| | | ||| || | || ||| ||||||| |||||| ||||| |||||||||||||||||| ||| || |
|
|
| T |
31178580 |
tgtgtatccttctattaaaatgcttcaacgggtgagtggggtgaagaccaaatttgaaaagtttcataaagagattgatatgatattgcaagatatcgtc |
31178481 |
T |
|
| Q |
323 |
gatgatcacaaaa |
335 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
31178480 |
gatgatcataaaa |
31178468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 23 - 335
Target Start/End: Original strand, 31224988 - 31225300
Alignment:
| Q |
23 |
agagaagaagaggtgtcaaatcttgttaaatcaataactgcaagtgaaggatcagttgttaatctcactcaaatgattctctcattaacaattgggatga |
122 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||| | ||| | |||| || | ||| ||||| | |
|
|
| T |
31224988 |
agagaagaagaggtgtcaaatcttgttgaatcaatatctgcaagtgaaggatcaattgttaatctgagtcataagatttatgcaatgacatcggggataa |
31225087 |
T |
|
| Q |
123 |
cagcgcggacagcatttggaaaaaagaataaacaccaagaagtgtttaaatcagcaatgaaggaaatatttaagctattgggaggattttcttttgcaga |
222 |
Q |
| |
|
| | | | |||| ||||| |||| |||||| || || ||||||| | ||||||| | ||||| ||| || | |||||||||||| | ||| || |
|
|
| T |
31225088 |
cgacacaggcagcgtttgggaaaaggaataagcagcatcaagtgttcagatcagcactaaaggagataactagtttgatgggaggattttgtattgttga |
31225187 |
T |
|
| Q |
223 |
tttgtatccttctattaaaattcttcaaatgttaagttggccaaggaaaaaacttgaaaaacttcatagagagactgatatgatattgcaagagatcatc |
322 |
Q |
| |
|
| ||||||||||||| ||||| |||||| | | ||| || | | || ||| ||||||| ||||||| ||||| |||||||||||||||||| |||||| |
|
|
| T |
31225188 |
tgtgtatccttctataaaaatgcttcaatgggtgagtagggcgaagaccaaagttgaaaagcttcataaagagattgatatgatattgcaagatatcatc |
31225287 |
T |
|
| Q |
323 |
gatgatcacaaaa |
335 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
31225288 |
gatgatcataaaa |
31225300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 170 - 335
Target Start/End: Original strand, 41369703 - 41369869
Alignment:
| Q |
170 |
aaatcagcaatgaaggaaatatttaagctattgggaggattttcttttgcagatttgtatccttctattaaaattcttcaaatgttaagttggccaagga |
269 |
Q |
| |
|
|||||||||||| ||||| | | ||| |||||| |||||||| |||| ||||||||||||||||||||||| ||||||| | ||||| || ||| || |
|
|
| T |
41369703 |
aaatcagcaatggaggaatcaataaagttattggaaggattttgcattgctgatttgtatccttctattaaaatacttcaaagggtaagtagggcaaaga |
41369802 |
T |
|
| Q |
270 |
aaaaacttgaaaaacttcatagagagac-tgatatgatattgcaagagatcatcgatgatcacaaaa |
335 |
Q |
| |
|
||| | ||||||||||| ||| || | |||||| ||||||||||| |||||| |||||||||||| |
|
|
| T |
41369803 |
ccaaaatggaaaaacttcagagaaaggcatgatattatattgcaagatatcatcaatgatcacaaaa |
41369869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 23 - 250
Target Start/End: Original strand, 41322116 - 41322344
Alignment:
| Q |
23 |
agagaagaagaggtgtcaaatcttgttaaatcaataac-tgcaagtgaaggatcagttgttaatctcactcaaatgattctctcattaacaattgggatg |
121 |
Q |
| |
|
|||||||| || ||| |||||||||||||||||||||| | |||||||||||||||||||||||||| | | | |||| ||||| | ||| |||||| |
|
|
| T |
41322116 |
agagaagatgaagtgacaaatcttgttaaatcaataacttttaagtgaaggatcagttgttaatctcagtgagaagattttctcaatgacatatgggata |
41322215 |
T |
|
| Q |
122 |
acagcgcggacagcatttggaaaaaagaataaacaccaagaagtgtttaaatcagcaatgaaggaaatatttaagctattgggaggattttcttttgcag |
221 |
Q |
| |
|
|||||| || | | ||||| |||| ||||| ||||||||| ||||| | | ||||| || || || || | |||||| ||| ||||| |||||| |
|
|
| T |
41322216 |
acagcgagggcggtttttgggaaaaggaatagacaccaagatgtgttcataccagcattggagaaagtagtggtgctattaggaagatttgaaattgcag |
41322315 |
T |
|
| Q |
222 |
atttgtatccttctattaaaattcttcaa |
250 |
Q |
| |
|
|||||||||||||||||||| | |||||| |
|
|
| T |
41322316 |
atttgtatccttctattaaattgcttcaa |
41322344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 251
Target Start/End: Original strand, 41336975 - 41337203
Alignment:
| Q |
23 |
agagaagaagaggtgtcaaatcttgttaaatcaataactgcaagtgaaggatcagttgttaatctcactcaaatgattctctcattaacaattgggatga |
122 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||| |||||||||| | ||||||||| || | |||| ||||| | || |||||| |
|
|
| T |
41336975 |
agagaagaagaggtgtccgatcttgttaaatcaatatctgcaaatgaaggatcaatcgttaatctctctaagtcgattttctcaatgacttatgggatcg |
41337074 |
T |
|
| Q |
123 |
cagcgcggacagcatttggaaaaaagaataaacaccaagaagtgtttaaatcagcaatgaaggaaatatttaagctattgggaggattttcttttgcaga |
222 |
Q |
| |
|
|| || |||| ||||| |||||||| | ||||||| || |||| |||||| |||| ||||| ||| |||||||||| ||||| | |||| || |
|
|
| T |
41337075 |
tggcacgttcagcgtttgggaaaaagaacagacaccaacaattgttcaaatcaacaatagaggaagcattgggcctattgggagaattttgtattgctga |
41337174 |
T |
|
| Q |
223 |
tttgtatccttctattaaaattcttcaaa |
251 |
Q |
| |
|
|||||||||||||||||||| ||||||| |
|
|
| T |
41337175 |
cttgtatccttctattaaaatacttcaaa |
41337203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 62 - 246
Target Start/End: Original strand, 41286141 - 41286325
Alignment:
| Q |
62 |
gcaagtgaaggatcagttgttaatctcactcaaatgattctctcattaacaattgggatgacagcgcggacagcatttggaaaaaagaataaacaccaag |
161 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||| | ||| ||| |||||| || ||||| || | ||||| |||||||| | |||||||| |
|
|
| T |
41286141 |
gcaagtgaaggatcagttgttaatctcactcagaagattttgtcaacaacctatgggataacggcgcgtgcaacttttgggaaaaagaacatacaccaag |
41286240 |
T |
|
| Q |
162 |
aagtgtttaaatcagcaatgaaggaaatatttaagctattgggaggattttcttttgcagatttgtatccttctattaaaattct |
246 |
Q |
| |
|
||| || |||| ||||||| ||||| ||| | || |||||||||||| ||| ||||||||||||||||||||| |||| |
|
|
| T |
41286241 |
aagcattcaaattagcaatggaggaagcattgagcctgatgggaggattttgcattgttgatttgtatccttctattaaatttct |
41286325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 278 - 386
Target Start/End: Original strand, 41310581 - 41310689
Alignment:
| Q |
278 |
gaaaaacttcatagagagactgatatgatattgcaagagatcatcgatgatcacaaaagtagtcacaagaaagctgggaagaatgatgatctagtagatg |
377 |
Q |
| |
|
|||||| |||| | ||||| | |||||||||||||||| |||||||| ||||||||||| | || |||| ||| | | || |||| ||||||||||||| |
|
|
| T |
41310581 |
gaaaaagttcacaaagagatttatatgatattgcaagacatcatcgacgatcacaaaagcattcgcaaggaagatagcaatgatgaagatctagtagatg |
41310680 |
T |
|
| Q |
378 |
ttcttctca |
386 |
Q |
| |
|
||||||||| |
|
|
| T |
41310681 |
ttcttctca |
41310689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 41430997 - 41431066
Alignment:
| Q |
23 |
agagaagaagaggtgtcaaatcttgttaaatcaataactgcaagtgaaggatcagttgttaatctcactc |
92 |
Q |
| |
|
|||||||||||||| ||||| || |||||||| ||| | || ||||||||||| ||||||||||||||| |
|
|
| T |
41430997 |
agagaagaagaggtttcaaaactagttaaatccatatgtacatgtgaaggatcaattgttaatctcactc |
41431066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 335
Target Start/End: Original strand, 41431253 - 41431311
Alignment:
| Q |
277 |
tgaaaaacttcatagagagactgatatgatattgcaagagatcatcgatgatcacaaaa |
335 |
Q |
| |
|
|||||||||| |||||| ||||||| |||||||||||| |||||| ||||||| |||| |
|
|
| T |
41431253 |
tgaaaaactttgtagagaaactgatacgatattgcaagacatcatcaatgatcataaaa |
41431311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 51
Target Start/End: Complemental strand, 31185305 - 31185277
Alignment:
| Q |
23 |
agagaagaagaggtgtcaaatcttgttaa |
51 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
31185305 |
agagaagaagaggtgtcaaatcttgttaa |
31185277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 23 - 332
Target Start/End: Complemental strand, 17249513 - 17249204
Alignment:
| Q |
23 |
agagaagaagaggtgtcaaatcttgttaaatcaataactgcaagtgaaggatcagttgttaatctcactcaaatgattctctcattaacaattgggatga |
122 |
Q |
| |
|
||||||||||| |||| | ||||||||||||||||| | |||||||||||| ||||||||||||||||| | |||| || |||||| |||||| |
|
|
| T |
17249513 |
agagaagaagaagtgttagatcttgttaaatcaatattttcaagtgaaggatgtgttgttaatctcactcagaagatttcttctttaacatatgggatag |
17249414 |
T |
|
| Q |
123 |
cagcgcggacagcatttggaaaaaagaataaacaccaagaagtgtttaaatcagcaatgaaggaaatatttaagctattgggaggattttcttttgcaga |
222 |
Q |
| |
|
||||| |||| || || |||| ||| ||||||||| ||||||| ||||||||||| |||||||| | | | ||||||||||||| | ||| || |
|
|
| T |
17249413 |
tggcgcgagcagctttcgggaaaaggaacaaacaccaacaagtgttcaaatcagcaatagaggaaatagtgagtttgttgggaggattttgtattgttga |
17249314 |
T |
|
| Q |
223 |
tttgtatccttctattaaaattcttcaaatgttaagttggccaaggaaaaaacttgaaaaacttcatagagagactgatatgatattgcaagagatcatc |
322 |
Q |
| |
|
||||||||||||||| ||||| ||| ||| | ||||| | | | ||| | |||||||||||||| || | |||||||||||||||||| ||||| |
|
|
| T |
17249313 |
tttgtatccttctatcaaaatacttaaaagggtaagtcaggtgaaaaccaaaatggaaaaacttcatagggaaattgatatgatattgcaagatatcata |
17249214 |
T |
|
| Q |
323 |
gatgatcaca |
332 |
Q |
| |
|
|||||||||| |
|
|
| T |
17249213 |
gatgatcaca |
17249204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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