View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16816_low_1 (Length: 729)
Name: NF16816_low_1
Description: NF16816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16816_low_1 |
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| [»] scaffold0050 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 412 - 713
Target Start/End: Original strand, 8087450 - 8087770
Alignment:
| Q |
412 |
aattgacaatgatgctccaactcagagtgcttcctgatttactcaaggttctcaattttcactaccacctgatatcatgtccatagttacatttttgagn |
511 |
Q |
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| T |
8087450 |
aattgataatgatgctccaactcagagtgcttcctgatttactcaaggttctcaattttcacaaccacctaatatcatgtccatagttacatttctgagt |
8087549 |
T |
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| Q |
512 |
nnnnnncttcagaaatcaataaaatccagaatgtatgtatcgttgttgctaatttcatacat-------------------tgtatatcattcaatttct |
592 |
Q |
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| T |
8087550 |
ttttttcttcagaaataaataaaatccagaatgtatgtatcgttgttactaatttcatacatcattgtttaatttatacattatatatcattcaatttct |
8087649 |
T |
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| Q |
593 |
actattgttgaacatatcatttcttaatttgtttattatttcaggaaaccatctatgtcactattgcagagataaaaaattgaatgccacccgatatgga |
692 |
Q |
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| T |
8087650 |
actattgttgaacatatcatttcttaatttgtttattatttcacgaaaccatctatgtcactattgcagagataaaaaattgaatgccacccgatatgga |
8087749 |
T |
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| Q |
693 |
tagacgtttcatggatgtaaa |
713 |
Q |
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| T |
8087750 |
tagacgtatgatggatgtaaa |
8087770 |
T |
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Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 190
Target Start/End: Complemental strand, 29500416 - 29500350
Alignment:
| Q |
124 |
aaaataaacatggaagtaatatcagtaatatattttaaaataagtggaaatgagatgtagaataatc |
190 |
Q |
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| T |
29500416 |
aaaataaacatggaagttatgtcagtaatttattttcacataaatggaaatgagatatagaataatc |
29500350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 8172 - 8131
Alignment:
| Q |
1 |
aagaaatttttatttctaaatcggctgtcattagttatgtac |
42 |
Q |
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| T |
8172 |
aagaaatttttatttctaaattggttgtcattagttatgtac |
8131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 173
Target Start/End: Original strand, 24779190 - 24779252
Alignment:
| Q |
112 |
aaataaataacgaaaa-taaacatggaagtaatatcagtaatatattttaaaataagtggaaa |
173 |
Q |
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| T |
24779190 |
aaatatataacgaaaaataaacatggaagtaatttcaatagtttattttaaaataaatggaaa |
24779252 |
T |
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