View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16816_low_14 (Length: 292)

Name: NF16816_low_14
Description: NF16816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16816_low_14
NF16816_low_14
[»] chr2 (17 HSPs)
chr2 (128-168)||(30020147-30020187)
chr2 (128-168)||(30040508-30040548)
chr2 (128-168)||(30078565-30078605)
chr2 (128-168)||(30103456-30103496)
chr2 (128-168)||(30109986-30110026)
chr2 (128-168)||(30121685-30121725)
chr2 (128-168)||(30136690-30136730)
chr2 (128-168)||(30234646-30234686)
chr2 (1-30)||(30020009-30020038)
chr2 (1-30)||(30040657-30040686)
chr2 (1-30)||(30078437-30078466)
chr2 (1-30)||(30110135-30110164)
chr2 (1-30)||(30121833-30121862)
chr2 (1-30)||(30234795-30234824)
chr2 (252-292)||(30020271-30020310)
chr2 (252-292)||(30040385-30040424)
chr2 (252-292)||(30109863-30109902)


Alignment Details
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 168
Target Start/End: Original strand, 30020147 - 30020187
Alignment:
Q  128 ctaaattgaacacagacacatttttatgccacacgatggtg 168  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30020147 ctaaattgaacacagacacatttttatgccacacgatggtg 30020187  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 30040548 - 30040508
Alignment:
Q  128 ctaaattgaacacagacacatttttatgccacacgatggtg 168  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30040548 ctaaattgaacacagacacatttttatgccacacgatggtg 30040508  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 168
Target Start/End: Original strand, 30078565 - 30078605
Alignment:
Q  128 ctaaattgaacacagacacatttttatgccacacgatggtg 168  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30078565 ctaaattgaacacagacacatttttatgccacacgatggtg 30078605  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 30103496 - 30103456
Alignment:
Q  128 ctaaattgaacacagacacatttttatgccacacgatggtg 168  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30103496 ctaaattgaacacagacacatttttatgccacacgatggtg 30103456  T

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Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 30110026 - 30109986
Alignment:
Q  128 ctaaattgaacacagacacatttttatgccacacgatggtg 168  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30110026 ctaaattgaacacagacacatttttatgccacacgatggtg 30109986  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 30121725 - 30121685
Alignment:
Q  128 ctaaattgaacacagacacatttttatgccacacgatggtg 168  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30121725 ctaaattgaacacagacacatttttatgccacacgatggtg 30121685  T

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Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 30136730 - 30136690
Alignment:
Q  128 ctaaattgaacacagacacatttttatgccacacgatggtg 168  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30136730 ctaaattgaacacagacacatttttatgccacacgatggtg 30136690  T

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Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 30234686 - 30234646
Alignment:
Q  128 ctaaattgaacacagacacatttttatgccacacgatggtg 168  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30234686 ctaaattgaacacagacacatttttatgccacacgatggtg 30234646  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 30020009 - 30020038
Alignment:
Q  1 aacagctaacaaataagagatggcaataga 30  Q
    ||||||||||||||||||||||||||||||    
T  30020009 aacagctaacaaataagagatggcaataga 30020038  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 30040686 - 30040657
Alignment:
Q  1 aacagctaacaaataagagatggcaataga 30  Q
    ||||||||||||||||||||||||||||||    
T  30040686 aacagctaacaaataagagatggcaataga 30040657  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 30078437 - 30078466
Alignment:
Q  1 aacagctaacaaataagagatggcaataga 30  Q
    ||||||||||||||||||||||||||||||    
T  30078437 aacagctaacaaataagagatggcaataga 30078466  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 30110164 - 30110135
Alignment:
Q  1 aacagctaacaaataagagatggcaataga 30  Q
    ||||||||||||||||||||||||||||||    
T  30110164 aacagctaacaaataagagatggcaataga 30110135  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 30121862 - 30121833
Alignment:
Q  1 aacagctaacaaataagagatggcaataga 30  Q
    ||||||||||||||||||||||||||||||    
T  30121862 aacagctaacaaataagagatggcaataga 30121833  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 30234824 - 30234795
Alignment:
Q  1 aacagctaacaaataagagatggcaataga 30  Q
    ||||||||||||||||||||||||||||||    
T  30234824 aacagctaacaaataagagatggcaataga 30234795  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 292
Target Start/End: Original strand, 30020271 - 30020310
Alignment:
Q  252 gctgttataaagtggtaaaataattctaggtaaattagaat 292  Q
    |||||||||||||||||||||||||||  ||||||||||||    
T  30020271 gctgttataaagtggtaaaataattct-cgtaaattagaat 30020310  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 292
Target Start/End: Complemental strand, 30040424 - 30040385
Alignment:
Q  252 gctgttataaagtggtaaaataattctaggtaaattagaat 292  Q
    |||||||||||||||||||||||||||  ||||||||||||    
T  30040424 gctgttataaagtggtaaaataattct-cgtaaattagaat 30040385  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 292
Target Start/End: Complemental strand, 30109902 - 30109863
Alignment:
Q  252 gctgttataaagtggtaaaataattctaggtaaattagaat 292  Q
    |||||||||||||||||||||||||||  ||||||||||||    
T  30109902 gctgttataaagtggtaaaataattct-cgtaaattagaat 30109863  T

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