View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16816_low_20 (Length: 262)
Name: NF16816_low_20
Description: NF16816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16816_low_20 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 46767304 - 46767565
Alignment:
| Q |
1 |
gtaaagaaaaggaacaaaaaagaaattgaagttcattatatagattccaaaaactctcttgtgctgagttctctgtctatgtctgcatgataatttttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46767304 |
gtaaagaaaaggaacaaaaaagaaattgaagttcattatatagattccaaaaactctcttgtgctgagttctctgtctatgtctgcatgataatttttgt |
46767403 |
T |
|
| Q |
101 |
actgataaagttggttttgacatcaaaatcaaatagtaaagctcttctttttactaataaggaacagtatttgagtatttaacaaaccaaaagaggcatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
46767404 |
actgataaagttggttttgacatcaaaatcaaatagtaaagctcttctttttactaataaggaacagtattcgagtatttaacaaaccaaaagaggcatg |
46767503 |
T |
|
| Q |
201 |
caaatttggcgggaataataattgttggaggctctaatacaataaggccctacaactctttg |
262 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46767504 |
caattttggcgggaataataattgttggaggctctaatacaataaggccctacaactctttg |
46767565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University