View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16816_low_22 (Length: 254)

Name: NF16816_low_22
Description: NF16816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16816_low_22
NF16816_low_22
[»] chr5 (2 HSPs)
chr5 (1-194)||(1961998-1962191)
chr5 (205-254)||(1961899-1961948)
[»] chr3 (2 HSPs)
chr3 (128-181)||(54258683-54258736)
chr3 (206-238)||(20502191-20502223)
[»] scaffold0072 (1 HSPs)
scaffold0072 (206-236)||(4897-4927)
[»] chr2 (2 HSPs)
chr2 (140-194)||(41170693-41170747)
chr2 (140-181)||(4661356-4661397)
[»] chr1 (1 HSPs)
chr1 (128-194)||(32515362-32515428)
[»] chr7 (1 HSPs)
chr7 (185-214)||(28844477-28844506)
[»] chr8 (1 HSPs)
chr8 (206-238)||(40280320-40280352)
[»] chr6 (1 HSPs)
chr6 (140-176)||(31672462-31672498)


Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 1962191 - 1961998
Alignment:
Q  1 attgctgagaatgcaaggagaatgggagcaagacatgttatgattatggcagcagatgttgtcaaggaagatgattgtagaagatttgttaatgaaacca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1962191 attgctgagaatgcaaggagaatgggagcaagacatgttatgattatggcagcagatgttgtcaaggaagatgattgtagaagatttgttaatgaaacca 1962092  T
Q  101 taaatgtctttggtcgtggtatgtttctttggatcatcatatttgagtttatctactcatataaacacttgtgagaatgttcggaatagcttat 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1962091 taaatgtctttggtcgtggtatgtttctttggatcatcatatttgagtttatctactcatataaacacttgtgagaatgttcggaatagcttat 1961998  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 1961948 - 1961899
Alignment:
Q  205 aaaatagcttatatataggcacttatatgataagagcacaagttgtaatc 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1961948 aaaatagcttatatataggcacttatatgataagagcacaagttgtaatc 1961899  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 54258736 - 54258683
Alignment:
Q  128 tttggatcatcatatttgagtttatctactcatataaacacttgtgagaatgtt 181  Q
    ||||||||| | ||||| ||||||| ||||||||||||||||||||||| ||||    
T  54258736 tttggatcaacttattttagtttatttactcatataaacacttgtgagattgtt 54258683  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 238
Target Start/End: Original strand, 20502191 - 20502223
Alignment:
Q  206 aaatagcttatatataggcacttatatgataag 238  Q
    |||||||||||||||| ||||||||||||||||    
T  20502191 aaatagcttatatataagcacttatatgataag 20502223  T

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Target: scaffold0072 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 236
Target Start/End: Complemental strand, 4927 - 4897
Alignment:
Q  206 aaatagcttatatataggcacttatatgata 236  Q
    |||||||||||||||||||||||||||||||    
T  4927 aaatagcttatatataggcacttatatgata 4897  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 194
Target Start/End: Complemental strand, 41170747 - 41170693
Alignment:
Q  140 tatttgagtttatctactcatataaacacttgtgagaatgttcggaatagcttat 194  Q
    |||||||||||||||||| | |||||||||||||||| | || |||||| |||||    
T  41170747 tatttgagtttatctactaacataaacacttgtgagactatttggaataacttat 41170693  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 181
Target Start/End: Complemental strand, 4661397 - 4661356
Alignment:
Q  140 tatttgagtttatctactcatataaacacttgtgagaatgtt 181  Q
    ||||||||||||||||||||||||||| ||||| ||| ||||    
T  4661397 tatttgagtttatctactcatataaactcttgtaagattgtt 4661356  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 194
Target Start/End: Original strand, 32515362 - 32515428
Alignment:
Q  128 tttggatcatcatatttgagtttatctactcatataaacacttgtgagaatgttcggaatagcttat 194  Q
    ||||||| | |||||||||||||||||||| | |||| ||||||||||| |||| || | |||||||    
T  32515362 tttggattagcatatttgagtttatctactaacataagcacttgtgagactgtttgggagagcttat 32515428  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 214
Target Start/End: Complemental strand, 28844506 - 28844477
Alignment:
Q  185 aatagcttatagcttatatgaaaatagctt 214  Q
    ||||||||||||||||||||||||||||||    
T  28844506 aatagcttatagcttatatgaaaatagctt 28844477  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 238
Target Start/End: Original strand, 40280320 - 40280352
Alignment:
Q  206 aaatagcttatatataggcacttatatgataag 238  Q
    ||||| |||||||||||||||||||||||||||    
T  40280320 aaataacttatatataggcacttatatgataag 40280352  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 176
Target Start/End: Original strand, 31672462 - 31672498
Alignment:
Q  140 tatttgagtttatctactcatataaacacttgtgaga 176  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  31672462 tatttgagtttatctactcacataaacactagtgaga 31672498  T

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