View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16816_low_23 (Length: 253)
Name: NF16816_low_23
Description: NF16816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16816_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 27545226 - 27545460
Alignment:
| Q |
18 |
ctagaaagatttttctcaatactttttgctcacttacttatgatatatagatagattcattgacttca----ttgtatttggtattgcttgttgtgtcat |
113 |
Q |
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| T |
27545226 |
ctagaaagatttttcttaatactttttgctcacttacttatgatatatagatagattcattgacttcattcattgtatttggtattgcttgttgtgtcat |
27545325 |
T |
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| Q |
114 |
tttatctcttgttaagaattaagatatccagccatgtctatatatatttctcaaactgtatgcataagattatttgaatatatgtgtaatttctgtattc |
213 |
Q |
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| T |
27545326 |
tttatctcttgttaagaattaaggtatccagccgtgtctatgtatatttctcaaactgtatgcataagattatttgaatatatgtgtaatttctgtattc |
27545425 |
T |
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| Q |
214 |
tac--cgaatatgtataa-tgctagttagtataat |
245 |
Q |
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| T |
27545426 |
taccacaaatatgtataattgctagttagtataat |
27545460 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 18642446 - 18642380
Alignment:
| Q |
25 |
gatttttctcaatactttttgctcacttacttatgatatatagatagattcattgacttcattgtat |
91 |
Q |
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| T |
18642446 |
gatttttcttaaaactttttgcttacttgcttctaatatatagatagattcattggtttcattgtat |
18642380 |
T |
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