View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16816_low_26 (Length: 238)
Name: NF16816_low_26
Description: NF16816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16816_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 71 - 220
Target Start/End: Complemental strand, 45391131 - 45390982
Alignment:
| Q |
71 |
ctgctgttcctgcgccacctccggcagagattttgctgaaagttttcatgcattgtgaaagctgtgctcggaaagttcgtcggtcgttgaaagattttcc |
170 |
Q |
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| T |
45391131 |
ctgctgttcctgcgccacctccggcagagattttgctgaaagttttcatgcattgtgaaagctgtgctcggaaagttcgtcggtcgttgaaagattttcc |
45391032 |
T |
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| Q |
171 |
aggtgttgaagaagtgataactgattgcaagtctcatacggtggttgtga |
220 |
Q |
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| T |
45391031 |
aggtgttgaagaagtgataactgattgcaagtctcatacggtggttgtga |
45390982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 88 - 220
Target Start/End: Complemental strand, 45386745 - 45386613
Alignment:
| Q |
88 |
cctccggcagagattttgctgaaagttttcatgcattgtgaaagctgtgctcggaaagttcgtcggtcgttgaaagattttccaggtgttgaagaagtga |
187 |
Q |
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| T |
45386745 |
cctccagcagagattttgctgagagttttcatgcattgtgaaggctgtgctcggaaagttcgtcggtcattgaaagattttccaggtgttgaagaagtga |
45386646 |
T |
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| Q |
188 |
taactgattgcaagtctcatacggtggttgtga |
220 |
Q |
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| T |
45386645 |
taactgattgcaaatctcatatggtggttgtga |
45386613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 71 - 220
Target Start/End: Complemental strand, 734739 - 734590
Alignment:
| Q |
71 |
ctgctgttcctgcgccacctccggcagagattttgctgaaagttttcatgcattgtgaaagctgtgctcggaaagttcgtcggtcgttgaaagattttcc |
170 |
Q |
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| T |
734739 |
ctgctgttcctgcgccacctccggcagagattttgctgaaagttttcatgcattgtgaaagctgtgctcggaaagttcgtcggtcgttgaaagattttcc |
734640 |
T |
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| Q |
171 |
aggtgttgaagaagtgataactgattgcaagtctcatacggtggttgtga |
220 |
Q |
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| T |
734639 |
aggtgttgaagaagtgatagctgattgcaagtctcatacggtggttgtga |
734590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 174
Target Start/End: Complemental strand, 40578235 - 40578165
Alignment:
| Q |
104 |
tgctgaaagttttcatgcattgtgaaagctgtgctcggaaagttcgtcggtcgttgaaagattttccaggt |
174 |
Q |
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| T |
40578235 |
tgcttaaagtcttcatgcattgtgaaggttgtgctcgtaaagttcgtcgttcactcaaaggttttccaggt |
40578165 |
T |
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