View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16816_low_3 (Length: 572)
Name: NF16816_low_3
Description: NF16816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16816_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 16 - 553
Target Start/End: Original strand, 37859352 - 37859889
Alignment:
| Q |
16 |
atgaatgacgctcatccgatggatcaagaagagtcacataccactattcgattgtgctccaagcttggagaaataatcggtaaacatattacctttccta |
115 |
Q |
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| T |
37859352 |
atgaatgacgctcagccgatggatcaagaagagtcacataccactattcgattgtgctccaagcttggagaaataatcggtaaacatattacctttccta |
37859451 |
T |
|
| Q |
116 |
agagtttgatgcactacaaaatcaatcattatcgatataannnnnnnnatcacca--gtctcattgccataatggagtttcgaaacattcgcaagctgca |
213 |
Q |
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| T |
37859452 |
agagtgtgatgcactacaaaatcaatcattatcgatataattttttttatcaccgttgtctcattgccataatggagtttcgaaacattcgcaagctgca |
37859551 |
T |
|
| Q |
214 |
tcgggtggatagttgcaaagtgtcaatgtaatagataatattccttaaacttgcctccaaacacattcagatcccttgaatcaaagccatgatctcggca |
313 |
Q |
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| T |
37859552 |
ttgggtggataattgcaaagtgtcaatgtaatagataatattccttaaacttgcctccaaacacattcagatcccttgaatcaaagccatgatctcggca |
37859651 |
T |
|
| Q |
314 |
tggaggctaatggaatagccaatattaccgtggaagccacattggtaatcaccgttggaattcctaatcaaaccaccaaatgctgccatacctggattgg |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
37859652 |
tggaggctaatggaatagccaatattaccgtggaagccacatttgtaatcaccgttggaattcctaatcaaaccacc--acgctgccatacctggattgg |
37859749 |
T |
|
| Q |
414 |
tttgggagcgagagcgaccatcgaaattgaaaacataagcattagttgcatcttccttccaagcaattagcctagttttcttgtttaatatctcgagtga |
513 |
Q |
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| T |
37859750 |
tttgggagcgagagcgaccatcgaaattgaaaacataagcattagttgcatcttccttccaagcaattagccgagttttcttttttaatatcttgagtga |
37859849 |
T |
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| Q |
514 |
taagcgtaaattttttacactaaagccatgagagggaagc |
553 |
Q |
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| T |
37859850 |
taagcgtaaattttttacactaaagccatgagagggaagc |
37859889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 16 - 553
Target Start/End: Original strand, 18101744 - 18102280
Alignment:
| Q |
16 |
atgaatgacgctcatccgatggatcaagaagagtcacataccactattcgattgtgctccaagcttggagaaataatcggtaaacatattacctttccta |
115 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18101744 |
atgaatgacgctcagccgatggatcaagaagagtcacataccactattcgattgtgctccaagcttggagaaataatcggtaaacatattacctttccta |
18101843 |
T |
|
| Q |
116 |
agagtttgatgcactacaaaatcaatcattatcgatataannnnnnnnatcacca--gtctcattgccataatggagtttcgaaacattcgcaagctgca |
213 |
Q |
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||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18101844 |
agagtgtgatgcactacaaaatcaatcattatcgatataattttttttatcaccgttgtctcattgccataatggagtttcgaaacattcgcaagctgca |
18101943 |
T |
|
| Q |
214 |
tcgggtggatagttgcaaagtgtcaatgtaatagataatattccttaaacttgcctccaaacacattcagatcccttgaatcaaagccatgatctcggca |
313 |
Q |
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| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18101944 |
ttgggtggataattgcaaagtgtcaatgtaatagataatattccttaaacttgcctccaaacacattcagatcccttgaatcaaagccatgatctcggca |
18102043 |
T |
|
| Q |
314 |
tggaggctaatggaatagccaatattaccgtggaagccacattggtaatcaccgttggaattcctaatcaaaccaccaaatgctgccatacctggattgg |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
18102044 |
tggaggctaatggaatagccaatattaccgtggaagccacatttgtaatcaccgttggaattcctaatcaaaccacc--acgctgccatacctggattgg |
18102141 |
T |
|
| Q |
414 |
tttgggagcgagagcgaccatcgaaattgaaaacataagcattagttgcatcttccttccaagcaattagcctagttttcttgtttaatatctcgagtga |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||| |||||| |
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| T |
18102142 |
tttgggagcgagagcgaccatcgaaattgaaaacataagcattagttgcatcttccttccaagcaattagccgag-tttcttttttaatatcttgagtga |
18102240 |
T |
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| Q |
514 |
taagcgtaaattttttacactaaagccatgagagggaagc |
553 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
18102241 |
taagcgtaaattttttacactaaagccatgagagggaagc |
18102280 |
T |
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