View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16816_low_5 (Length: 501)
Name: NF16816_low_5
Description: NF16816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16816_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 435; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 14 - 486
Target Start/End: Original strand, 31229378 - 31229855
Alignment:
| Q |
14 |
ttcttaggagaggtcttgtcaagttatattaaggtcactggatgttaacatcgtaacctatccat----tgaaaacaaatggagtattttgttaaacaaa |
109 |
Q |
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| T |
31229378 |
ttcttaggagaggtcttgtcaagttatattaaggtcactggatgttaacatcttaacctatccatgatttgaaaacaaatggagtattttgttaaacaaa |
31229477 |
T |
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| Q |
110 |
atgattatacgtttattaatagacactcgtaataaaagagtttaggtaatcaaagaaaacaaggataaattcaacataagtttccacaagttgatactac |
209 |
Q |
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| T |
31229478 |
atgattatacgtttattaatagacactcgtaataaaagagtttaggtaatcaaagaaaacaag-ataaattcaacataagtttccacaagttgatactac |
31229576 |
T |
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| Q |
210 |
aagctatcatgagagctattaaaataaaa--aagttacaaacaactaatgaccatatcacaaggtatttttataatttcgtttaaatccacgcaaacatg |
307 |
Q |
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| T |
31229577 |
aagctatcatgagagctattaaaataaaagtaagttacaaacaactaatgaccatatgacaaggtatttttataatttcgtttaaatccacgcaaacatg |
31229676 |
T |
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| Q |
308 |
tttatatcaaaagatgaaacttatatgcacataatatgatgagctttaggaggaggtgttctctcgcatcaatgatgctctctaattaggggctgcatta |
407 |
Q |
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| T |
31229677 |
tttatatcaaaagatgaaacttatatgcacataatatgatgagctttaggaggaggtgttctctcgcatcaatgatgctctctaattaggggctgcatta |
31229776 |
T |
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| Q |
408 |
aggctagatgttatgatttacaaatgtttctcaatttcatgctggaatgggcatcagttgatatgatatggcttgttct |
486 |
Q |
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| T |
31229777 |
aggctagatgttatgatttacaaatgtttctcaatttcatgctggaatgggcatcagttgatatgatatggcttgttct |
31229855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 340 - 409
Target Start/End: Original strand, 31178843 - 31178912
Alignment:
| Q |
340 |
aatatgatgagctttaggaggaggtgttctctcgcatcaatgatgctctctaattaggggctgcattaag |
409 |
Q |
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| T |
31178843 |
aatatgatgagctttagggggaggtgttgtctcgtatccatggagctctctaaatagggacttcattaag |
31178912 |
T |
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