View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16817_high_1 (Length: 816)

Name: NF16817_high_1
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16817_high_1
NF16817_high_1
[»] chr8 (1 HSPs)
chr8 (13-803)||(41301508-41302314)


Alignment Details
Target: chr8 (Bit Score: 631; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 631; E-Value: 0
Query Start/End: Original strand, 13 - 803
Target Start/End: Original strand, 41301508 - 41302314
Alignment:
Q  13 tcaataattgctataacggggaagaatagaaacaactagtttaaaggcatttcccatccatttaaaagagtcaattctatagtagttaagcatcctaagt 112  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41301508 tcaataattgctataacggggaagaatagaaacaacttgtttaaaggtatttcccatccatttaaaagagtcaattctatagtagttaagcatcctaagt 41301607  T
Q  113 catgaaccaaatacacattaattgagcataaagaaatgggacgtgagagtatatataattctataacttagaaaccagtcataaatctcttccacggcga 212  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41301608 catgaaccaaatacacattaattgcgcataaagaaatgggacgtgagagtatatataattctataacttagaaaccagtcataaatctcttccacggcga 41301707  T
Q  213 acaatatagaaaatgttgagaattaactgcattccctcgtcttatctagttaaagataannnnnnnng-atttattcaaacacaattgtatatgtagttc 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||    
T  41301708 acaatatagaaaatgttgagaattaactgcattccctcgtcttatctagttaaagataattatttatttatttattcaaacacaattgtatatgtagttc 41301807  T
Q  312 agaagacaaaatatatgtgaacggagtattgaaattggagtcagcctcataagaaaatgtaatatacaagtatttattttcatatatggttttgtctaat 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41301808 agaagacaaaatatatgtgaacggagtattgaaattggagtcagcctcataagaaaatgtaatatacaagtatttattttcatatatggttttgtctaat 41301907  T
Q  412 atgcataagtaagaagatcttgcatcatacacaaatgtctttttcaccattgaattaataaggcgcatcacatcatatctaattattttaatgatccaat 511  Q
    ||||||||||||||||||||| ||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41301908 atgcataagtaagaagatcttacatcatatacaaatatcttttttaccattgaattaataaggcgcatcacatcatatctaattattttaatgatccaat 41302007  T
Q  512 gataaatagtttgtgcataatgtaagaccatc-tatctcatttatgcatcatataattggcctccaaaaatatgta-------ttaagctggnnnnnnnn 603  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||       |||||||||            
T  41302008 gataaatagtttgtgcataatgtaagaccttcgtatctcatttatgcatcatataattggcctccaaaaatatgtattactatttaagctgg---gtttt 41302104  T
Q  604 nnnatatgaaatcttatatgctcattctcgacccatcgcacactaatagaataccaacacacaaatgatttactaagggttatataatcatgatgagatt 703  Q
       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  41302105 tttatatgaaatcttatatgctcattctcgacccatcgcacactaatagaataccaacacacaaatgatttactaagggttatataatcatgatgagact 41302204  T
Q  704 cttgaaagaaagaaagttccactataagaaaaacac----------ccgattactcccaaaatttaaaatatttcttttttgggaagtattaaatttatt 793  Q
    ||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41302205 cttgaaagaaagaaagttccactataagaaaaacacaactggttttccgattactcccaaaatttaaaatatttcttttttgggaagtattaaatttatt 41302304  T
Q  794 ttcctgccct 803  Q
    ||||||||||    
T  41302305 ttcctgccct 41302314  T

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