View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16817_high_11 (Length: 529)
Name: NF16817_high_11
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16817_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-147; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 27 - 303
Target Start/End: Complemental strand, 31265621 - 31265345
Alignment:
| Q |
27 |
caactgaccaataacaatgtctaattggaacataacatttggtgatgcttgatatagaccctgccactacgataaatattttacaaaaactctataagat |
126 |
Q |
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| T |
31265621 |
caactgaccaataacaatgtctaattggaacataacatttggtgatgcttgatatagaccctgccactacgataaatattttacaaaaactatataagat |
31265522 |
T |
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| Q |
127 |
ataacgtatgcaaacataataaacttaagacgatattgtggatgtgatttgaaagtagtaggtacgtatggagatgaaaaatttcatttgtaattttcat |
226 |
Q |
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| T |
31265521 |
ataacgtatgcaaacataataaacttaagacgatattgtggatgtgatttgaaagtagtaggtacgtatggagatgaaaaatttcatgtgtaattttcat |
31265422 |
T |
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| Q |
227 |
acaatagagtaaagtgtaatattttcctatttaaactcaatatatttaaatttttgtggttatcattctttcttctt |
303 |
Q |
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| T |
31265421 |
ataatagagtaaagtgtaatattttcctatttaaactcaatatatttaaatttttgtggttatcattctttcttctt |
31265345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 350 - 512
Target Start/End: Complemental strand, 31265330 - 31265168
Alignment:
| Q |
350 |
gaaagatcattctttctaaatggtgagagattacaatatagtcttgtgtgaaaattatacatgagataattgaggcacatttgaattattaggacacaaa |
449 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31265330 |
gaaagatcattctttctaaatggtgagagattacaatatagtcttgtgtgaaaattatacatgagataattgaggcacatttgaattattaggacgcaaa |
31265231 |
T |
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| Q |
450 |
tgtcagatccaccaagccattttcattgctagcaccactggtgtgtttttccttccttctata |
512 |
Q |
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| T |
31265230 |
tgtcagatccaccaagccattttcattgctagcaccactggtgtgtttttccttccttctata |
31265168 |
T |
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