View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16817_high_12 (Length: 525)
Name: NF16817_high_12
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16817_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 58 - 507
Target Start/End: Original strand, 45286669 - 45287118
Alignment:
| Q |
58 |
tgaacataatggaaggatcactttccacaatttctattcaccatcttctacttctttacacgagtggcacctttaaaaaactatatcaccacagaataac |
157 |
Q |
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| T |
45286669 |
tgaacataatggaaggatcactttccacaatttctattcaccatcttctacttctttacacgagtgccacctttaaaaaactatatcaccacagaataac |
45286768 |
T |
|
| Q |
158 |
tcnnnnnnnntaaaactcagtaatcaatgagcaagatccaatgacatttttcaaccaaagaaacacaagccgtacttccctatcccccacctatttttct |
257 |
Q |
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| T |
45286769 |
tcaaaaaaaataaaactcagtaatcaatgagcaagatccaatgacatttttcaaccaaagaaacacaagccgtacttccctatcccccacctatttttct |
45286868 |
T |
|
| Q |
258 |
ttgtagttttaatttacatcttcgaatttttctgaaattatagaggtgtttttgttgagttgccatcaggttcattactactatcactggtgatccgctt |
357 |
Q |
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| T |
45286869 |
ttgtagttttaatttacatctttgaatttttctgaaattatagaggtgtttttgttgagttgccatcaggttcattactactatcactggtgatccgctt |
45286968 |
T |
|
| Q |
358 |
tgattccccatcttcgtgtacctcatcaagaacatcagaagctgtttcccattttctgctgctttgttcccacaaggactgccttagaaaggaagcaact |
457 |
Q |
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| T |
45286969 |
tgattccccatcttcgtgtacctcatcaagaacatcagaagctgtttcccattttctgctgctttgttcccacaaggactgccttagaaaggaagcaact |
45287068 |
T |
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| Q |
458 |
tgtctctgtcccctttctgtgtgaagcatactgcctaaatccacagatgt |
507 |
Q |
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| T |
45287069 |
tgtctctgtcccctttctgtgtgaagcatactgcctaaatccacagatgt |
45287118 |
T |
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