View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16817_high_20 (Length: 461)
Name: NF16817_high_20
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16817_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 22 - 432
Target Start/End: Original strand, 41739265 - 41739675
Alignment:
| Q |
22 |
atgcttgcaagtacgcaacttgctttgatcatatcgcagtcccattcnnnnnnnaagtgaaagttgcacggaatcaaactaaactagtatttgttaatgg |
121 |
Q |
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| T |
41739265 |
atgcttgcaagtacgcaacttgctttgatcatatcgcagtcccattctttttttaagtgaaagttgcacggaatcaaactaaactagtatttgttattgg |
41739364 |
T |
|
| Q |
122 |
tctcaagttaagtttgaaatttgaatagattgagttcgaatcttaactaatactagtagtattatgaatacaagtgaattgtttaagtttgaccgcctca |
221 |
Q |
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| T |
41739365 |
tctcaagttaaatttgaaatttgaatagattgagttcgaatcttaactaatactagtagtattatgaatacaagtgaatcgtttaagtttgaccgcctca |
41739464 |
T |
|
| Q |
222 |
atgtttaatcaaccttaaaattaagctcgattaatcaaatgttcaatcaagttcctaaacttgcattgacataaacaaggattcttgaatgcgacaatga |
321 |
Q |
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| T |
41739465 |
atgttttatcaaccttaaaattaagctcgattaatcaaatgttcaatcaagttcctaaacttgcattgacataaacaaggattcttgaatgcgacaatga |
41739564 |
T |
|
| Q |
322 |
ccggtacggtgcaagtcatggacaattcaacaagaattgctaccaacctttatttcttgaagaccaactcaagtctctcattgcttcaataatcttaaca |
421 |
Q |
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|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41739565 |
ccggtacggtgcaagtcatgcacacttcaacaagaattgctaccaacctttatttcttgaagaccaactcaagtctctcattgcttcaataatcttaaca |
41739664 |
T |
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| Q |
422 |
tggtagtataa |
432 |
Q |
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| T |
41739665 |
tggtagtataa |
41739675 |
T |
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