View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16817_high_23 (Length: 452)
Name: NF16817_high_23
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16817_high_23 |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Original strand, 49870632 - 49871061
Alignment:
| Q |
1 |
cgttgtggttagtaatttgtttgaaagaatgagagcaaatccaattatggtcaagttcaaggaaatgatttaattagcattgaagaaaagaatatgtgat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49870632 |
cgttgtggttagtaatttgtttgaaagaatgagagcaaatctaattatggtcaagttcaaggaaatgatttaattagcattgaagaaaagaatatgtgat |
49870731 |
T |
|
| Q |
101 |
tcatttgaaacaaggaaagaattgttcaatgtataattcatttgaaactgttgagtataattaaggtcatgtgcaaccaaatacataaatcacaaacaat |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49870732 |
tcatttgaaacaaggaaataattgttcaatgtataattcatttgaaactgttgagtataattaaggtcatgtgcaaccaaatacataaatcacaaacaat |
49870831 |
T |
|
| Q |
201 |
caatgaaggttataatctttgagaaacctcaaaatccagataaaaaccttcattaattagttcttttttcacaagggttcattaattagttattcacagc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
49870832 |
ttgtgaaggttataatctttgagaaacctcaaaatccagataaaaaccttcattaattagttcttttttcataagggttcattaattagttattcgaagc |
49870931 |
T |
|
| Q |
301 |
aatgttcactccattttctaccatggacatgaatactgatgatccagtgttgtctaccacacccatgaaaggtgattcgtataaacgacaattggtaaga |
400 |
Q |
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| T |
49870932 |
aatgttcactccattttctaccatggatatgaatactgatgatccagtgttgtctaccacacccatgaaaggtgattcgtataaacgacaattggtaaga |
49871031 |
T |
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| Q |
401 |
ttgacaacaaaaagtaagaattgtttcttt |
430 |
Q |
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| T |
49871032 |
ttgacaacaaaaagtaagaattgtttcttt |
49871061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 17982608 - 17982512
Alignment:
| Q |
1 |
cgttgtggttagtaatttgtttgaaagaatgagagcaaatccaattatggtcaagttcaaggaaatgatttaattagcattgaagaaaagaatatgtg |
98 |
Q |
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| T |
17982608 |
cgttgcggttagtaatttgtttgaaagattgagagtaaatc-aattttggtcaagttcaaggaaatgatttaatatgcattgaagaaaagaatatgtg |
17982512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 20606628 - 20606557
Alignment:
| Q |
2 |
gttgtggttagtaatttgtttgaaagaatgagagcaaatccaattatggtcaagttcaaggaaatgatttaa |
73 |
Q |
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| T |
20606628 |
gttgcggttagtaatttgtttgaaagaatgagagtaaatccaattttggccaagttcaaggaaataatttaa |
20606557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 4e-42; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 219 - 398
Target Start/End: Complemental strand, 44204915 - 44204737
Alignment:
| Q |
219 |
ttgagaaacctcaaaatccagat-aaaaaccttcattaattagttcttttttcacaagggttcattaattagttatt-cacagcaatgttcactccattt |
316 |
Q |
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|||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||| || ||| ||||||| ||| | |
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| T |
44204915 |
ttgagaaacctcaaaatccatattaaaaaccttcattaattagttcttttttattaagggttcattaattagttctttcactacaatgtttgctc---tg |
44204819 |
T |
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| Q |
317 |
tctaccatggacatgaatactgatgatccagtgttgtctaccacacccatgaaaggtgattcgtataaacgacaattggtaa |
398 |
Q |
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| T |
44204818 |
tctaccatggatatgaatattgttgatccagtgctgtctaccacacccatgaaaggtgattcatataaacaacaattggtaa |
44204737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 109 - 201
Target Start/End: Complemental strand, 44205065 - 44204974
Alignment:
| Q |
109 |
aacaaggaaagaattgttcaatgtataattcatttgaaactgttgagtataattaaggtcatgtgcaaccaaatacataaatcacaaacaatc |
201 |
Q |
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|||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
44205065 |
aacaagcaaagaattgttcaatgtgtaattcatttgaaactgttaagtataattaagat-atgtgcaaccaaatacataaatcacaaacaatc |
44204974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 2 - 101
Target Start/End: Complemental strand, 44205212 - 44205109
Alignment:
| Q |
2 |
gttgtggttagtaatttgtttgaaagaatgagagcaaatccaattatggtcaagttcaaggaaatgatttaat-ta---gcattgaagaaaagaatatgt |
97 |
Q |
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||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| || | ||||||||| ||||||||| |
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| T |
44205212 |
gttgtggttagtaatttgtttgaaagaatgagagcaagttcaattatggtcaagttcaaggaaatgatttaatatatatgaattgaagaacagaatatgt |
44205113 |
T |
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| Q |
98 |
gatt |
101 |
Q |
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|||| |
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| T |
44205112 |
gatt |
44205109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 184199 - 184128
Alignment:
| Q |
2 |
gttgtggttagtaatttgtttgaaagaatgagagcaaatccaattatggtcaagttcaaggaaatgatttaa |
73 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
184199 |
gttgcggttagtaatttgtttgaaagaatgagagcaaatccaattttggccaagttcaaggaaatgatttaa |
184128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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