View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16817_high_24 (Length: 449)

Name: NF16817_high_24
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16817_high_24
NF16817_high_24
[»] chr7 (23 HSPs)
chr7 (21-444)||(47158187-47158629)
chr7 (244-436)||(47085661-47085853)
chr7 (244-416)||(19544473-19544645)
chr7 (327-444)||(32450768-32450885)
chr7 (242-437)||(298631-298826)
chr7 (343-449)||(39857110-39857216)
chr7 (346-449)||(2000128-2000230)
chr7 (364-449)||(43664773-43664858)
chr7 (364-449)||(14999922-15000007)
chr7 (364-449)||(25970487-25970572)
chr7 (362-437)||(47238940-47239015)
chr7 (342-444)||(45202503-45202605)
chr7 (282-406)||(40233406-40233529)
chr7 (392-449)||(25472724-25472781)
chr7 (392-444)||(26827727-26827779)
chr7 (368-449)||(26826440-26826521)
chr7 (282-343)||(40722159-40722220)
chr7 (328-432)||(4035476-4035580)
chr7 (368-444)||(30825248-30825324)
chr7 (392-449)||(37371161-37371218)
chr7 (263-332)||(47239022-47239091)
chr7 (393-449)||(30139788-30139844)
chr7 (362-405)||(38169478-38169522)
[»] chr5 (17 HSPs)
chr5 (234-449)||(19375365-19375580)
chr5 (234-449)||(40979344-40979558)
chr5 (243-449)||(10900065-10900271)
chr5 (345-449)||(2526319-2526422)
chr5 (343-444)||(53631-53732)
chr5 (333-449)||(33387655-33387771)
chr5 (330-444)||(33082870-33082984)
chr5 (364-444)||(8958467-8958547)
chr5 (263-315)||(25256863-25256915)
chr5 (263-315)||(25320654-25320706)
chr5 (282-432)||(29367434-29367585)
chr5 (362-444)||(41040100-41040182)
chr5 (365-437)||(25256785-25256857)
chr5 (365-437)||(25320576-25320648)
chr5 (392-444)||(41742186-41742238)
chr5 (393-449)||(11018388-11018444)
chr5 (392-444)||(19356583-19356635)
[»] chr2 (14 HSPs)
chr2 (233-444)||(44002570-44002781)
chr2 (237-436)||(37551484-37551684)
chr2 (249-449)||(19860192-19860392)
chr2 (327-432)||(43694981-43695086)
chr2 (362-444)||(7473570-7473652)
chr2 (364-444)||(3739012-3739092)
chr2 (364-444)||(37996772-37996852)
chr2 (392-449)||(17480896-17480953)
chr2 (392-449)||(43342236-43342293)
chr2 (392-444)||(35458149-35458201)
chr2 (362-449)||(37640720-37640807)
chr2 (283-336)||(44180586-44180639)
chr2 (375-449)||(32497168-32497242)
chr2 (311-432)||(33598091-33598212)
[»] chr4 (18 HSPs)
chr4 (234-449)||(39732734-39732949)
chr4 (234-444)||(5937807-5938017)
chr4 (234-444)||(50523835-50524045)
chr4 (254-444)||(8503712-8503902)
chr4 (343-449)||(28911614-28911720)
chr4 (333-449)||(16203053-16203169)
chr4 (362-444)||(26457163-26457245)
chr4 (364-449)||(53663594-53663679)
chr4 (362-434)||(51677154-51677226)
chr4 (362-444)||(22606324-22606406)
chr4 (343-441)||(53404078-53404176)
chr4 (364-449)||(30418356-30418441)
chr4 (392-449)||(49723865-49723922)
chr4 (392-444)||(29386000-29386052)
chr4 (394-449)||(38767875-38767930)
chr4 (392-444)||(28963832-28963884)
chr4 (396-444)||(48407038-48407086)
chr4 (343-405)||(39382990-39383052)
[»] scaffold0184 (1 HSPs)
scaffold0184 (234-444)||(9658-9868)
[»] chr3 (23 HSPs)
chr3 (234-449)||(50392779-50392994)
chr3 (282-449)||(45489070-45489237)
chr3 (237-437)||(44610795-44610995)
chr3 (242-417)||(30809741-30809916)
chr3 (344-449)||(40237333-40237438)
chr3 (362-449)||(11263743-11263830)
chr3 (347-449)||(28883727-28883829)
chr3 (364-449)||(42074446-42074531)
chr3 (333-406)||(44328682-44328755)
chr3 (364-444)||(51229781-51229861)
chr3 (343-449)||(51407497-51407603)
chr3 (364-444)||(28182424-28182504)
chr3 (362-449)||(45150650-45150737)
chr3 (367-444)||(48181126-48181203)
chr3 (343-444)||(53687341-53687442)
chr3 (392-444)||(48254468-48254520)
chr3 (282-432)||(21985337-21985488)
chr3 (364-444)||(39251530-39251610)
chr3 (415-449)||(30810813-30810847)
chr3 (343-449)||(33025757-33025863)
chr3 (374-432)||(39267532-39267590)
chr3 (312-405)||(46797771-46797865)
chr3 (343-405)||(52692038-52692100)
[»] chr1 (20 HSPs)
chr1 (234-449)||(41512068-41512283)
chr1 (237-444)||(42137665-42137865)
chr1 (234-444)||(24075446-24075656)
chr1 (276-449)||(3850824-3850997)
chr1 (343-449)||(11829110-11829216)
chr1 (322-434)||(1762230-1762342)
chr1 (355-444)||(31100430-31100519)
chr1 (343-449)||(11051121-11051227)
chr1 (372-449)||(46033636-46033713)
chr1 (328-429)||(27065043-27065144)
chr1 (392-449)||(13509899-13509956)
chr1 (355-449)||(27416610-27416703)
chr1 (358-444)||(49430681-49430767)
chr1 (392-449)||(47655847-47655904)
chr1 (392-444)||(7385307-7385359)
chr1 (393-449)||(44740228-44740284)
chr1 (410-449)||(50030928-50030967)
chr1 (343-405)||(5271536-5271598)
chr1 (392-449)||(6706214-6706271)
chr1 (397-449)||(11051056-11051108)
[»] chr8 (15 HSPs)
chr8 (283-449)||(2025486-2025652)
chr8 (261-406)||(7636393-7636538)
chr8 (333-436)||(3590097-3590200)
chr8 (343-444)||(924134-924235)
chr8 (364-436)||(13015733-13015805)
chr8 (362-445)||(37684164-37684247)
chr8 (362-449)||(35802303-35802390)
chr8 (364-449)||(33165845-33165931)
chr8 (343-444)||(35164345-35164446)
chr8 (392-449)||(45276362-45276419)
chr8 (410-449)||(36821586-36821625)
chr8 (392-449)||(8416744-8416801)
chr8 (392-449)||(22936529-22936586)
chr8 (367-427)||(38023004-38023064)
chr8 (282-348)||(38022937-38023003)
[»] chr6 (5 HSPs)
chr6 (253-442)||(20838461-20838650)
chr6 (327-449)||(30134164-30134286)
chr6 (345-449)||(4146847-4146950)
chr6 (328-405)||(27825042-27825119)
chr6 (392-449)||(10683249-10683306)
[»] scaffold0702 (1 HSPs)
scaffold0702 (282-432)||(4540-4689)
[»] scaffold0662 (1 HSPs)
scaffold0662 (282-432)||(3409-3558)
[»] scaffold0097 (1 HSPs)
scaffold0097 (364-449)||(33021-33106)
[»] scaffold0068 (1 HSPs)
scaffold0068 (392-449)||(37777-37834)
[»] scaffold0006 (1 HSPs)
scaffold0006 (364-449)||(91590-91675)
[»] scaffold0069 (1 HSPs)
scaffold0069 (343-442)||(16848-16947)
[»] scaffold0808 (1 HSPs)
scaffold0808 (396-449)||(4176-4229)


Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 21 - 444
Target Start/End: Complemental strand, 47158629 - 47158187
Alignment:
Q  21 taaacctccatgcataaccatcgccaaccgagagagcatagtagtaattcagaggaaaagacaaaattaaacatgtgttggaaaaattgagtcgagggat 120  Q
    ||||||||||||||||||||||||||||| |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47158629 taaacctccatgcataaccatcgccaacctagagagcatagta---attcagaggaaaagacaaaattaaacatgtgttggaaaaattgagtcgagggat 47158533  T
Q  121 gattaaagagattccatgcttgatgttattgaaagactataataatgcgcaatcactatattatagcatataaattgtaacttggcaacaaaataattag 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47158532 gattaaagagattccatgcttgatgttattgaaagactataataatgcgcaatcactatattatagcatataaattgtaacttggcaacaaaataattag 47158433  T
Q  221 tagca------------tcaa-------aagtgtgtgttaggttcaacttctacaccatttaaaagcacttttggtagcatcaaaagtgaaaactagcaa 301  Q
    |||||            ||||       ||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  47158432 tagcatatataatgaattcaaacctagtaagtgtgtgtttggttcagcttctacaccatttaaaagcatttttggtagcatcaaaagtgaaaactagcaa 47158333  T
Q  302 ttccaacaggtttgatttaacttctcaaaatcaattctcatctccaaaagcatttctggatgaagctacaattcctaacttttgagtta---gctagaat 398  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||| |||||||||| |||     || |||    
T  47158332 ttccaacaggtttggtttaacttctcaaaatcaattctcatctccaaaagcaattttgggtgaagctacaattcataacttttgaattaaatattataat 47158233  T
Q  399 caattctcgaataaattttatattttgattattacaacctattatt 444  Q
    |||||||| | ||||||||||||||| ||||||| || ||||||||    
T  47158232 caattctccattaaattttatatttttattattataatctattatt 47158187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 244 - 436
Target Start/End: Complemental strand, 47085853 - 47085661
Alignment:
Q  244 ttcaacttctacaccatttaaaagcacttttggtagcatcaaaagtgaaaactagcaattccaacaggtttgatttaacttctcaaaatcaattctcatc 343  Q
    |||| |||||||| | || ||||||| |||||||||| ||||||||||||| |||||||| ||||| |||||||||| |||||||||||||||||| |||    
T  47085853 ttcagcttctacatccttcaaaagcaattttggtagcttcaaaagtgaaaattagcaatttcaacatgtttgatttagcttctcaaaatcaattctaatc 47085754  T
Q  344 tccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaac 436  Q
    || ||||||| || ||| ||||| ||||||||||||||||||||||  ||||||| ||||||| | | || |||||||||| |||||||||||    
T  47085753 tctaaaagcaattttggttgaagttacaattcctaacttttgagtttactagaattaattctccattgaaatttatattttaattattacaac 47085661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 244 - 416
Target Start/End: Original strand, 19544473 - 19544645
Alignment:
Q  244 ttcaacttctacaccatttaaaagcacttttggtagcatcaaaagtgaaaactagcaattccaacaggtttgatttaacttctcaaaatcaattctcatc 343  Q
    |||| |||||||| | || ||||||| || ||||||| |||||||||||||||||||||||||||| ||||| || | ||||||||||||||||||||||    
T  19544473 ttcagcttctacatccttcaaaagcaattctggtagcttcaaaagtgaaaactagcaattccaacatgtttggttcagcttctcaaaatcaattctcatc 19544572  T
Q  344 tccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattt 416  Q
    |||||||| | || ||| |||||||||||||| || ||||||||||  ||||||||||||||| | |||||||    
T  19544573 tccaaaagtaattatggttgaagctacaattcatagcttttgagtttactagaatcaattctccattaaattt 19544645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 327 - 444
Target Start/End: Original strand, 32450768 - 32450885
Alignment:
Q  327 caaaatcaattctcatctccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttga 426  Q
    ||||| |||||||| |||||||||||| || ||| ||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  32450768 caaaagcaattctcttctccaaaagcaattttggttgaagctacaatttctaacttttgagttaactagaatcaattctccaataaattttatattttga 32450867  T
Q  427 ttattacaacctattatt 444  Q
    ||||||||||| ||||||    
T  32450868 ttattacaacccattatt 32450885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 242 - 437
Target Start/End: Complemental strand, 298826 - 298631
Alignment:
Q  242 ggttcaacttctacaccatttaaaagcacttttggtagcatcaaaagtgaaaactagcaattccaacaggtttgatttaacttctcaaaatcaattctca 341  Q
    |||||| |||||||  | || ||||||| || ||||||| | ||||||||||| |||||||| ||| | ||||| || | ||||||||||||||||||||    
T  298826 ggttcagcttctacggccttcaaaagcaattctggtagctttaaaagtgaaaattagcaatttcaatatgtttggttcagcttctcaaaatcaattctca 298727  T
Q  342 tctccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacc 437  Q
    | || ||||||| || ||  |||||||||||||| || ||||| ||||  ||||||||||||||| | ||||||||||||||| ||||||||||||    
T  298726 tttctaaaagcaattttgattgaagctacaattcttagcttttaagtttactagaatcaattctccattaaattttatattttaattattacaacc 298631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 343 - 449
Target Start/End: Original strand, 39857110 - 39857216
Alignment:
Q  343 ctccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctatta 442  Q
    ||||||||| | ||||||||||||||||||||| || ||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||| ||||    
T  39857110 ctccaaaagtaattctggatgaagctacaattcatagcttttgagttaactagaatcaattctccattaaattttatattttgattattacaacccatta 39857209  T
Q  443 ttctcct 449  Q
    || ||||    
T  39857210 ttttcct 39857216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 346 - 449
Target Start/End: Complemental strand, 2000230 - 2000128
Alignment:
Q  346 caaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctattattc 445  Q
    ||||| || |||||| ||||||||||||||||| ||||||||||| ||||||||||||||| | |||| ||||||||||||||||||||||| ||||||     
T  2000230 caaaaacaattctggttgaagctacaattcctaccttttgagttaactagaatcaattctccattaaa-tttatattttgattattacaacccattattt 2000132  T
Q  446 tcct 449  Q
    ||||    
T  2000131 tcct 2000128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 364 - 449
Target Start/End: Complemental strand, 43664858 - 43664773
Alignment:
Q  364 aagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctattattctcct 449  Q
    ||||||||||| ||||| ||||| ||  ||||||||||||||  | ||||||||||||||||||||||||||||||||||| ||||    
T  43664858 aagctacaatttctaacctttgactttcctagaatcaattctacattaaattttatattttgattattacaacctattattttcct 43664773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 364 - 449
Target Start/End: Original strand, 14999922 - 15000007
Alignment:
Q  364 aagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctattattctcct 449  Q
    |||||||||||||||| |||||  ||  ||||||||||||||  | |||||||||||||||||||||||||| |||||||| ||||    
T  14999922 aagctacaattcctaatttttggctttcctagaatcaattctacattaaattttatattttgattattacaatctattattttcct 15000007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 364 - 449
Target Start/End: Original strand, 25970487 - 25970572
Alignment:
Q  364 aagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctattattctcct 449  Q
    ||||||||||||||| ||||||  ||   |||||||||||||  | ||||||||||||||||||||||||||||||||||| ||||    
T  25970487 aagctacaattcctagcttttggctttcttagaatcaattctacattaaattttatattttgattattacaacctattattttcct 25970572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 362 - 437
Target Start/End: Complemental strand, 47239015 - 47238940
Alignment:
Q  362 tgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacc 437  Q
    |||||||||  ||||||||||||||||||| |||||||||||||  | |||||||||||||||| || ||||||||    
T  47239015 tgaagctaccgttcctaacttttgagttagttagaatcaattctgcattaaattttatattttggttgttacaacc 47238940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 342 - 444
Target Start/End: Original strand, 45202503 - 45202605
Alignment:
Q  342 tctccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctatt 441  Q
    ||||||||| || || ||| |||| | ||||||  || |||||  |||| ||||||||||||||| ||||||||||||||||| |||||||||| |||||    
T  45202503 tctccaaaaacaattttggttgaaaccacaatttttagcttttaggttaactagaatcaattctccaataaattttatattttaattattacaatctatt 45202602  T
Q  442 att 444  Q
    |||    
T  45202603 att 45202605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 282 - 406
Target Start/End: Original strand, 40233406 - 40233529
Alignment:
Q  282 tcaaaagtgaaaactagcaattccaacaggtttgatttaacttctcaaaatcaattctcatctccaaaagcatttctggatgaagctacaattcctaact 381  Q
    |||||||||||||||| |||||  || |  |||| || ||||||||||||| ||||||||||| |||||||| || ||| ||||| || ||||| |||||    
T  40233406 tcaaaagtgaaaactaccaattttaatatatttg-ttcaacttctcaaaattaattctcatcttcaaaagcaattttggttgaagttataattcttaact 40233504  T
Q  382 tttgagttagctagaatcaattctc 406  Q
    ||||||||   | ||||||||||||    
T  40233505 tttgagtttattggaatcaattctc 40233529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 392 - 449
Target Start/End: Complemental strand, 25472781 - 25472724
Alignment:
Q  392 ctagaatcaattctcgaataaattttatattttgattattacaacctattattctcct 449  Q
    ||||||||||||||  | |||||||| |||||||||||||||||||||||||| ||||    
T  25472781 ctagaatcaattctacattaaattttctattttgattattacaacctattattttcct 25472724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 392 - 444
Target Start/End: Complemental strand, 26827779 - 26827727
Alignment:
Q  392 ctagaatcaattctcgaataaattttatattttgattattacaacctattatt 444  Q
    ||||||||||||||  | |||||||||||||||||||||||||| ||||||||    
T  26827779 ctagaatcaattctacattaaattttatattttgattattacaatctattatt 26827727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 368 - 449
Target Start/End: Original strand, 26826440 - 26826521
Alignment:
Q  368 tacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctattattctcct 449  Q
    |||||||||||||||||   ||  ||| ||||||||||  | |||| ||||||||||| |||||||||||||||||| ||||    
T  26826440 tacaattcctaactttttcctttcctataatcaattctacattaaaatttatattttgcttattacaacctattattttcct 26826521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 282 - 343
Target Start/End: Original strand, 40722159 - 40722220
Alignment:
Q  282 tcaaaagtgaaaactagcaattccaacaggtttgatttaacttctcaaaatcaattctcatc 343  Q
    |||| ||||||| | |||||||||||||  ||||||||||||||| |||||| |||||||||    
T  40722159 tcaagagtgaaatcgagcaattccaacatatttgatttaacttcttaaaatctattctcatc 40722220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 432
Target Start/End: Original strand, 4035476 - 4035580
Alignment:
Q  328 aaaatcaattctcatctccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgat 427  Q
    |||| |||||||| | |||||||||| || |   ||||||||  | |||||||||||||||| | |||||||||||||  ||| ||||||||| |||| |    
T  4035476 aaaagcaattctcttgtccaaaagcaattttctttgaagctaggaatcctaacttttgagtttggtagaatcaattctacaattaattttatactttggt 4035575  T
Q  428 tatta 432  Q
    |||||    
T  4035576 tatta 4035580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 444
Target Start/End: Original strand, 30825248 - 30825324
Alignment:
Q  368 tacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctattatt 444  Q
    ||||||||||| ||||||  ||  | ||||||||||||  | ||||||| ||||||| |||||||||||||||||||    
T  30825248 tacaattcctagcttttggctttccaagaatcaattctacattaaatttaatattttaattattacaacctattatt 30825324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 449
Target Start/End: Original strand, 37371161 - 37371218
Alignment:
Q  392 ctagaatcaattctcgaataaattttatattttgattattacaacctattattctcct 449  Q
    ||||||||||||||  | |||||||| |||||||||||||||||| ||| ||| ||||    
T  37371161 ctagaatcaattctacattaaattttctattttgattattacaacttatgattttcct 37371218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 332
Target Start/End: Complemental strand, 47239091 - 47239022
Alignment:
Q  263 aaaagcacttttggtagcatcaaaagtgaaaactagcaattccaacaggtttgatttaacttctcaaaat 332  Q
    |||||||||| | ||||  |||||||||||||| || | |||||||| |||||||| |||||||| ||||    
T  47239091 aaaagcacttctagtagtctcaaaagtgaaaacaagtagttccaacatgtttgattcaacttctcgaaat 47239022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 393 - 449
Target Start/End: Complemental strand, 30139844 - 30139788
Alignment:
Q  393 tagaatcaattctcgaataaattttatattttgattattacaacctattattctcct 449  Q
    |||||||||||||    |||||||| |||||||||||||| ||||||||||| ||||    
T  30139844 tagaatcaattctacgttaaattttctattttgattattataacctattattttcct 30139788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 405
Target Start/End: Original strand, 38169478 - 38169522
Alignment:
Q  362 tgaagctacaattcctaacttttga-gttagctagaatcaattct 405  Q
    ||||||||||||| ||||||||||| ||||| |||||||||||||    
T  38169478 tgaagctacaatttctaacttttgaggttagatagaatcaattct 38169522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 234 - 449
Target Start/End: Complemental strand, 19375580 - 19375365
Alignment:
Q  234 gtgtgttaggttcaacttctacaccatttaaaagcacttttggtagcatcaaaagtgaaaactagcaattccaacaggtttgatttaacttctcaaaatc 333  Q
    ||||||| |||||| ||||||||||  |||||| ||||| ||||||| ||||||||||||||| |||||||||||  ||||| || | ||||||||||||    
T  19375580 gtgtgtttggttcagcttctacacctcttaaaaacacttctggtagcttcaaaagtgaaaacttgcaattccaacgtgtttggttaagcttctcaaaatc 19375481  T
Q  334 aattctcatctccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattac 433  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  19375480 aattctcatctccaaaagcaattctggatgaagctacaattcctaacttttgagttagctagaatcaattctctaataaattttatattttgattattac 19375381  T
Q  434 aacctattattctcct 449  Q
    ||||||||||| ||||    
T  19375380 aacctattattttcct 19375365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 234 - 449
Target Start/End: Original strand, 40979344 - 40979558
Alignment:
Q  234 gtgtgttaggttcaacttctacaccatttaaaagcacttttggtagcatcaaaagtgaaaactagcaattccaacaggtttgatttaacttctcaaaatc 333  Q
    |||||||  ||||| ||||||||||  |||||||||||| || |||| ||||||||||||||| |||||||||||| ||||| || | ||| ||||||||    
T  40979344 gtgtgtttagttcagcttctacacctcttaaaagcacttatg-tagcttcaaaagtgaaaacttgcaattccaacatgtttggttcagcttatcaaaatc 40979442  T
Q  334 aattctcatctccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattac 433  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  40979443 aattctcatctccaaaagcaattctggatgaagctacaattcctagcttttgagttagctataatcaattctccaataaattttatattttgattattac 40979542  T
Q  434 aacctattattctcct 449  Q
    ||||||||||||||||    
T  40979543 aacctattattctcct 40979558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 243 - 449
Target Start/End: Original strand, 10900065 - 10900271
Alignment:
Q  243 gttcaacttctacaccatttaaaagcacttttggtagcatcaaaagtgaaaactagcaattccaacaggtttgatttaacttctcaaaatcaattctcat 342  Q
    ||||| ||| ||||||  |||||| ||||| ||||| | ||||||||||||| | |||||||||||| ||||| || | |||||||||||||||||||||    
T  10900065 gttcagcttttacacctcttaaaaacacttctggtaacttcaaaagtgaaaatttgcaattccaacatgtttggttcagcttctcaaaatcaattctcat 10900164  T
Q  343 ctccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctatta 442  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10900165 ctccaaaagcaattctggatgaagctacaattcctaacttttgagttagctagaatcaattctccaataaattttatattttgattattacaacctatta 10900264  T
Q  443 ttctcct 449  Q
    || ||||    
T  10900265 ttttcct 10900271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 345 - 449
Target Start/End: Original strand, 2526319 - 2526422
Alignment:
Q  345 ccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctattatt 444  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||  || |||||||||||||||||||||||||| ||||||    
T  2526319 ccaaaagcaattctggatgaagctacaattcctagcttttgagttaactagaatcaattctc-cattaattttatattttgattattacaacccattatt 2526417  T
Q  445 ctcct 449  Q
     ||||    
T  2526418 ttcct 2526422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 343 - 444
Target Start/End: Complemental strand, 53732 - 53631
Alignment:
Q  343 ctccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctatta 442  Q
    ||||||||||| || ||| ||||||||||||||||| |||||| |||| ||| |||||||| || ||||||||||||||||| |||||||||||||||||    
T  53732 ctccaaaagcaattatggttgaagctacaattcctagcttttgggttaactataatcaattatccaataaattttatattttaattattacaacctatta 53633  T
Q  443 tt 444  Q
    ||    
T  53632 tt 53631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 333 - 449
Target Start/End: Complemental strand, 33387771 - 33387655
Alignment:
Q  333 caattctcatctccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattatta 432  Q
    ||||| || ||||||||| || |||||| ||||||||||||||||||||||||||||  | | ||||||||||| | ||||||||||||||| |||||||    
T  33387771 caattttcttctccaaaaacaattctggttgaagctacaattcctaacttttgagttgaccataatcaattctccattaaattttatattttaattatta 33387672  T
Q  433 caacctattattctcct 449  Q
    ||||| |||||| ||||    
T  33387671 caacccattattttcct 33387655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 330 - 444
Target Start/End: Complemental strand, 33082984 - 33082870
Alignment:
Q  330 aatcaattctcatctccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgatta 429  Q
    ||||||||||| | |||||||  | |||||| | ||||||| ||||| ||||||||||||| ||||||||||||||| |   ||||||||||||| ||||    
T  33082984 aatcaattctcttttccaaaattaattctggttaaagctaccattccaaacttttgagttaactagaatcaattctccatctaattttatattttaatta 33082885  T
Q  430 ttacaacctattatt 444  Q
    |||||||| ||||||    
T  33082884 ttacaaccaattatt 33082870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 444
Target Start/End: Complemental strand, 8958547 - 8958467
Alignment:
Q  364 aagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctattatt 444  Q
    |||||||||||||||| |||||  ||  ||||||||||||||  | ||||||| | ||||||||||| |||||||||||||    
T  8958547 aagctacaattcctaatttttggctttcctagaatcaattctacactaaatttaaaattttgattataacaacctattatt 8958467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 263 - 315
Target Start/End: Complemental strand, 25256915 - 25256863
Alignment:
Q  263 aaaagcacttttggtagcatcaaaagtgaaaactagcaattccaacaggtttg 315  Q
    ||||||| || ||||||| |||||||||||||||||||||||||||| |||||    
T  25256915 aaaagcaattctggtagcttcaaaagtgaaaactagcaattccaacatgtttg 25256863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 263 - 315
Target Start/End: Complemental strand, 25320706 - 25320654
Alignment:
Q  263 aaaagcacttttggtagcatcaaaagtgaaaactagcaattccaacaggtttg 315  Q
    ||||||| || ||||||| |||||||||||||||||||||||||||| |||||    
T  25320706 aaaagcaattctggtagcttcaaaagtgaaaactagcaattccaacatgtttg 25320654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 282 - 432
Target Start/End: Complemental strand, 29367585 - 29367434
Alignment:
Q  282 tcaaaagtgaaaactagcaattcca-acaggtttgatttaacttctcaaaatcaattctcatctccaaaagcatttctggatgaagctacaattcctaac 380  Q
    |||||||||||||  || |||| || ||| ||||| |||  ||| |||||| |||||||| | |||||||||| || |   |||||||| || |||||||    
T  29367585 tcaaaagtgaaaaaaagtaatttcacacatgtttgttttggcttttcaaaaacaattctcttgtccaaaagcaattttctttgaagctagaaatcctaac 29367486  T
Q  381 ttttgagttagctagaatcaattctcgaataaattttatattttgattatta 432  Q
    ||||||||| | |||||||||||||  | | ||||||||| |||| ||||||    
T  29367485 ttttgagtttggtagaatcaattctacatttaattttatactttggttatta 29367434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 444
Target Start/End: Complemental strand, 41040182 - 41040100
Alignment:
Q  362 tgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctattatt 444  Q
    ||||||||||| ||||| ||||||  ||  | ||||||||||||    ||||||||| |||||||||||||||||||||||||    
T  41040182 tgaagctacaaatcctagcttttggcttttcaagaatcaattctacgttaaattttaaattttgattattacaacctattatt 41040100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 437
Target Start/End: Complemental strand, 25256857 - 25256785
Alignment:
Q  365 agctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacc 437  Q
    ||||| ||||| |||||||||||||   ||||||||||| || |  |||||||||||||| ||||||||||||    
T  25256857 agctataattcataacttttgagtttaatagaatcaattatccatgaaattttatattttaattattacaacc 25256785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 437
Target Start/End: Complemental strand, 25320648 - 25320576
Alignment:
Q  365 agctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacc 437  Q
    ||||| ||||| |||||||||||||   ||||||||||| || |  |||||||||||||| ||||||||||||    
T  25320648 agctataattcataacttttgagtttaatagaatcaattatccatgaaattttatattttaattattacaacc 25320576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 444
Target Start/End: Complemental strand, 41742238 - 41742186
Alignment:
Q  392 ctagaatcaattctcgaataaattttatattttgattattacaacctattatt 444  Q
    ||||||||||||||  | |||||||| |||||||||| |||||||||||||||    
T  41742238 ctagaatcaattctacattaaattttctattttgattgttacaacctattatt 41742186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 393 - 449
Target Start/End: Complemental strand, 11018444 - 11018388
Alignment:
Q  393 tagaatcaattctcgaataaattttatattttgattattacaacctattattctcct 449  Q
    ||||||||||| |  | ||||||||||||||| ||||||| ||||||||||| ||||    
T  11018444 tagaatcaattatacattaaattttatattttaattattagaacctattattttcct 11018388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 444
Target Start/End: Original strand, 19356583 - 19356635
Alignment:
Q  392 ctagaatcaattctcgaataaattttatattttgattattacaacctattatt 444  Q
    ||||||||||||||  | |||||||| |||||| |||||||||| ||||||||    
T  19356583 ctagaatcaattctacattaaattttctatttttattattacaatctattatt 19356635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 148; Significance: 6e-78; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 233 - 444
Target Start/End: Original strand, 44002570 - 44002781
Alignment:
Q  233 tgtgtgttaggttcaacttctacaccatttaaaagcacttttggtagcatcaaaagtgaaaactagcaattccaacaggtttgatttaacttctcaaaat 332  Q
    |||||||| |||||| |||||||| |  |||||||||||| ||||||| ||||||||||||||| |||||||||||| ||||| || | |||||||||||    
T  44002570 tgtgtgtttggttcagcttctacaactcttaaaagcacttctggtagcttcaaaagtgaaaacttgcaattccaacatgtttggttcagcttctcaaaat 44002669  T
Q  333 caattctcatctccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattatta 432  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  44002670 caattctcatctctaaaagcaattctggatgaagctacaattcctagcttttgagttagctagaatcaattctccaataaattttatattttgattatta 44002769  T
Q  433 caacctattatt 444  Q
    ||||||||||||    
T  44002770 caacctattatt 44002781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 237 - 436
Target Start/End: Original strand, 37551484 - 37551684
Alignment:
Q  237 tgttaggttcaacttctacaccatttaaaagcacttttggtagcatcaaaagtgaaaactagcaattccaacaggtttgatttaactt-ctcaaaatcaa 335  Q
    |||| |||||||||| |||||| ||||| ||||||| ||||||| ||||||||||||||||| |||||||| | ||||| |||||||| |||||||||||    
T  37551484 tgtttggttcaacttatacaccctttaagagcacttctggtagcttcaaaagtgaaaactagtaattccaatatgtttggtttaactttctcaaaatcaa 37551583  T
Q  336 ttctcatctccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaa 435  Q
    ||||||| |||||||||| |||||| |||||||||||||||||  || ||||||| ||||||||||||||| |||||||||| |||||||||||||||||    
T  37551584 ttctcatatccaaaagcaattctggttgaagctacaattcctagtttctgagttaactagaatcaattctccaataaattttgtattttgattattacaa 37551683  T
Q  436 c 436  Q
    |    
T  37551684 c 37551684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 249 - 449
Target Start/End: Original strand, 19860192 - 19860392
Alignment:
Q  249 cttctacaccatttaaaagcacttttggtagcatcaaaagtgaaaactagcaattccaacaggtttgatttaacttctcaaaatcaattctcatctccaa 348  Q
    |||||||| | |||||||||| || || | |  |||||||||||||||| | ||||||||| ||||| ||||||||||||||||||||||||||||| ||    
T  19860192 cttctacatcctttaaaagcaattctgctggtttcaaaagtgaaaactaacgattccaacatgtttggtttaacttctcaaaatcaattctcatctctaa 19860291  T
Q  349 aagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctattattctcc 448  Q
    ||||| || | | ||||| |||||||| |||||||||||||| ||| ||||||||||| |||||| |||||||||||||||||||||||||||||| |||    
T  19860292 aagcaattttaggtgaagttacaattcttaacttttgagttaactataatcaattctccaataaaatttatattttgattattacaacctattattttcc 19860391  T
Q  449 t 449  Q
    |    
T  19860392 t 19860392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 327 - 432
Target Start/End: Original strand, 43694981 - 43695086
Alignment:
Q  327 caaaatcaattctcatctccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttga 426  Q
    ||||| |||||||| |||  |||| || |||||| ||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||    
T  43694981 caaaagcaattctcttctgtaaaaacaattctggctgaagctacaattcctaacttttgagttaactagaatcaattctccattaaattttatattttga 43695080  T
Q  427 ttatta 432  Q
    ||||||    
T  43695081 ttatta 43695086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 362 - 444
Target Start/End: Original strand, 7473570 - 7473652
Alignment:
Q  362 tgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctattatt 444  Q
    ||||||||||| ||||||||||||  ||  | ||||||||||||  | |||||||||||||||||||||||||||||||||||    
T  7473570 tgaagctacaaatcctaacttttggctttccaagaatcaattctacattaaattttatattttgattattacaacctattatt 7473652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 364 - 444
Target Start/End: Complemental strand, 3739092 - 3739012
Alignment:
Q  364 aagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctattatt 444  Q
    |||||||||||||||| |||||| ||   |||||||||||||  | ||||||| |||||||||||||||||||||||||||    
T  3739092 aagctacaattcctaatttttgactttcttagaatcaattctacattaaatttaatattttgattattacaacctattatt 3739012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 364 - 444
Target Start/End: Original strand, 37996772 - 37996852
Alignment:
Q  364 aagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctattatt 444  Q
    ||||||||||||||||||||||  ||  || |||||||||||  | |||||||||||| |||||||||||||| |||||||    
T  37996772 aagctacaattcctaacttttggctttccttgaatcaattctacattaaattttatatcttgattattacaacatattatt 37996852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 392 - 449
Target Start/End: Original strand, 17480896 - 17480953
Alignment:
Q  392 ctagaatcaattctcgaataaattttatattttgattattacaacctattattctcct 449  Q
    ||||||||||||||  | |||||||| |||||||||||||||||||||||||| ||||    
T  17480896 ctagaatcaattctacattaaattttctattttgattattacaacctattattttcct 17480953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 392 - 449
Target Start/End: Complemental strand, 43342293 - 43342236
Alignment:
Q  392 ctagaatcaattctcgaataaattttatattttgattattacaacctattattctcct 449  Q
    ||||||||||||||  | |||||||| |||||||||||||||||||||||||| ||||    
T  43342293 ctagaatcaattctacattaaattttctattttgattattacaacctattattttcct 43342236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 392 - 444
Target Start/End: Complemental strand, 35458201 - 35458149
Alignment:
Q  392 ctagaatcaattctcgaataaattttatattttgattattacaacctattatt 444  Q
    ||||||||||||||  | |||||||| ||||||||||||||||||||||||||    
T  35458201 ctagaatcaattctacattaaattttctattttgattattacaacctattatt 35458149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 362 - 449
Target Start/End: Complemental strand, 37640807 - 37640720
Alignment:
Q  362 tgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctattattctcct 449  Q
    ||||||||||| || || ||||||  ||  ||||||||||||||  | ||||||||||||||||||||| ||||| ||||||| ||||    
T  37640807 tgaagctacaaatcttagcttttggctttcctagaatcaattctacattaaattttatattttgattatcacaacatattattttcct 37640720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 283 - 336
Target Start/End: Original strand, 44180586 - 44180639
Alignment:
Q  283 caaaagtgaaaactagcaattccaacaggtttgatttaacttctcaaaatcaat 336  Q
    ||||| |||||||||||||||  |||| |||||||| |||||||||||||||||    
T  44180586 caaaaatgaaaactagcaattttaacatgtttgattcaacttctcaaaatcaat 44180639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 449
Target Start/End: Complemental strand, 32497242 - 32497168
Alignment:
Q  375 cctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctattattctcct 449  Q
    |||||||||||| ||  || |||||||||||  | ||||||||||||||  ||||||| ||||||||||| ||||    
T  32497242 cctaacttttgactttcctcgaatcaattctacattaaattttatatttgaattattataacctattattttcct 32497168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 432
Target Start/End: Complemental strand, 33598212 - 33598091
Alignment:
Q  311 gtttgatttaacttctcaaaatcaattctcatctccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaat 410  Q
    ||||| ||| |||| |||||| |||||||| | |||||||||| || |   ||||||||  | ||||| |||||||||| | |||||||||||||  | |    
T  33598212 gtttggtttgacttttcaaaagcaattctcgtgtccaaaagcaattttctttgaagctaggaatcctagcttttgagtttggtagaatcaattctacatt 33598113  T
Q  411 aaattttatattttgattatta 432  Q
     ||||||||| |||| ||||||    
T  33598112 taattttatactttggttatta 33598091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 234 - 449
Target Start/End: Original strand, 39732734 - 39732949
Alignment:
Q  234 gtgtgttaggttcaacttctacaccatttaaaagcacttttggtagcatcaaaagtgaaaactagcaattccaacaggtttgatttaacttctcaaaatc 333  Q
    ||||||| |||||| |||||||| |  |||||||||||| ||||||| ||||| ||||||| | |||||||||||| ||||| || | ||||||||||||    
T  39732734 gtgtgtttggttcagcttctacaactcttaaaagcacttctggtagcttcaaaggtgaaaatttgcaattccaacatgtttggttcagcttctcaaaatc 39732833  T
Q  334 aattctcatctccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattac 433  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  39732834 aattctcatctccaaaagcaattctggatgaagctacaattcctagcttttgagttagctagaatcaattctccaataaattttatattttgattattac 39732933  T
Q  434 aacctattattctcct 449  Q
    ||||||||||| ||||    
T  39732934 aacctattattttcct 39732949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 234 - 444
Target Start/End: Complemental strand, 5938017 - 5937807
Alignment:
Q  234 gtgtgttaggttcaacttctacaccatttaaaagcacttttggtagcatcaaaagtgaaaactagcaattccaacaggtttgatttaacttctcaaaatc 333  Q
    ||||||| |||||| ||||||||||  |||||||||||| |||||||  |||||||||||||| ||||||||| || ||||| || | ||||||||||||    
T  5938017 gtgtgtttggttcagcttctacacctcttaaaagcacttctggtagctacaaaagtgaaaacttgcaattccagcatgtttggttcagcttctcaaaatc 5937918  T
Q  334 aattctcatctccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattac 433  Q
    |||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5937917 aattctcatctccaaaagcaattatggatgaagctacaattcctagcttttgagttagctagaatcaattctccaataaattttatattttgattattac 5937818  T
Q  434 aacctattatt 444  Q
    |||||||||||    
T  5937817 aacctattatt 5937807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 234 - 444
Target Start/End: Complemental strand, 50524045 - 50523835
Alignment:
Q  234 gtgtgttaggttcaacttctacaccatttaaaagcacttttggtagcatcaaaagtgaaaactagcaattccaacaggtttgatttaacttctcaaaatc 333  Q
    ||||||| |||||| ||||||||||   |||||||| || || |||| ||||||||||| ||| |||||| ||| | ||||| || ||||||||||||||    
T  50524045 gtgtgtttggttcagcttctacacctcctaaaagcatttctgatagcttcaaaagtgaacacttgcaatttcaatatgtttggttcaacttctcaaaatc 50523946  T
Q  334 aattctcatctccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattac 433  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  50523945 aattctcatctccaaaagcaattctggatgaagctacaattcctagcttttgagttagctagaatcaattctccaataaatttaatattttgattattac 50523846  T
Q  434 aacctattatt 444  Q
    ||||| |||||    
T  50523845 aacctgttatt 50523835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 254 - 444
Target Start/End: Original strand, 8503712 - 8503902
Alignment:
Q  254 acaccatttaaaagcacttttggtagcatcaaaagtgaaaactagcaattccaacaggtttgatttaacttctcaaaatcaattctcatctccaaaagca 353  Q
    ||||| ||||||| ||||| || |||| | || ||||||||||| ||||||||||  ||| | || || || ||||||| |||||||||||| |||| ||    
T  8503712 acaccctttaaaaacacttctgatagctttaatagtgaaaactaacaattccaacgagttcggttcaatttttcaaaattaattctcatctctaaaatca 8503811  T
Q  354 tttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctattatt 444  Q
     || | | |||||||||||||||||||||||| |||| |||||||||||| || ||||||||||||||||||||||||| |||||||||||    
T  8503812 attttagttgaagctacaattcctaacttttgtgttaactagaatcaattttccaataaattttatattttgattattataacctattatt 8503902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 343 - 449
Target Start/End: Original strand, 28911614 - 28911720
Alignment:
Q  343 ctccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctatta 442  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||| ||| ||||||||||| | |||||||||||||||||||||||||||| ||||    
T  28911614 ctccaaaagcaattgtggatgaagctacaattcctaacttttgagttaactaaaatcaattctccattaaattttatattttgattattacaacccatta 28911713  T
Q  443 ttctcct 449  Q
    || ||||    
T  28911714 ttttcct 28911720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 333 - 449
Target Start/End: Complemental strand, 16203169 - 16203053
Alignment:
Q  333 caattctcatctccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattatta 432  Q
    |||||||| |||||||||||| || ||| ||||||||||||||||| ||||||||||  ||||||||||||||| | ||||||||||||||| |||||||    
T  16203169 caattctcttctccaaaagcaattttggttgaagctacaattcctagcttttgagttgactagaatcaattctccattaaattttatattttaattatta 16203070  T
Q  433 caacctattattctcct 449  Q
    ||||| |||||| ||||    
T  16203069 caacccattattttcct 16203053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 362 - 444
Target Start/End: Original strand, 26457163 - 26457245
Alignment:
Q  362 tgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctattatt 444  Q
    ||||||||||||| ||| |||||| |||| ||||||||||||||| ||||||||||||||||| ||||||||| |||||||||    
T  26457163 tgaagctacaatttctagcttttgggttaactagaatcaattctccaataaattttatattttaattattacatcctattatt 26457245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 364 - 449
Target Start/End: Complemental strand, 53663679 - 53663594
Alignment:
Q  364 aagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctattattctcct 449  Q
    ||||||||||||||||||||||  ||  ||| ||||||||||  | ||||||||||||||||||||||||||||||||||| ||||    
T  53663679 aagctacaattcctaacttttggctttcctataatcaattctacattaaattttatattttgattattacaacctattattttcct 53663594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 362 - 434
Target Start/End: Original strand, 51677154 - 51677226
Alignment:
Q  362 tgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattaca 434  Q
    ||||||||||||||||||||||||||||  |||||||||||| || | ||||||||||||||| |||||||||    
T  51677154 tgaagctacaattcctaacttttgagtttactagaatcaattttccattaaattttatattttaattattaca 51677226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 362 - 444
Target Start/End: Complemental strand, 22606406 - 22606324
Alignment:
Q  362 tgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctattatt 444  Q
    ||||||||||| ||||| ||||||| ||  | ||||||||||||  | ||||||||||||||||||||||||| |||||||||    
T  22606406 tgaagctacaaatcctagcttttgactttccaagaatcaattctatattaaattttatattttgattattacagcctattatt 22606324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 343 - 441
Target Start/End: Complemental strand, 53404176 - 53404078
Alignment:
Q  343 ctccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctatt 441  Q
    ||||||||||| ||||   | ||||||||||||||| ||||||  ||  |||||||||||| |  | ||||||||||||||||||||||||||||||||    
T  53404176 ctccaaaagcaattctccttaaagctacaattcctagcttttggttttcctagaatcaattttacattaaattttatattttgattattacaacctatt 53404078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 364 - 449
Target Start/End: Complemental strand, 30418441 - 30418356
Alignment:
Q  364 aagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctattattctcct 449  Q
    ||||||||| |||||||||||   ||  ||||||||||||||  | |||||||| |||||||||||||||||||||||||| ||||    
T  30418441 aagctacaaatcctaacttttagctttcctagaatcaattctacattaaattttctattttgattattacaacctattattttcct 30418356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 392 - 449
Target Start/End: Original strand, 49723865 - 49723922
Alignment:
Q  392 ctagaatcaattctcgaataaattttatattttgattattacaacctattattctcct 449  Q
    ||||||||||||||  | ||||||||||||||||||||||||||||||||||| ||||    
T  49723865 ctagaatcaattctatattaaattttatattttgattattacaacctattattttcct 49723922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 392 - 444
Target Start/End: Complemental strand, 29386052 - 29386000
Alignment:
Q  392 ctagaatcaattctcgaataaattttatattttgattattacaacctattatt 444  Q
    ||||||||||||||  |||||||||| ||||||||||||||||||||||||||    
T  29386052 ctagaatcaattctacaataaattttttattttgattattacaacctattatt 29386000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 394 - 449
Target Start/End: Original strand, 38767875 - 38767930
Alignment:
Q  394 agaatcaattctcgaataaattttatattttgattattacaacctattattctcct 449  Q
    ||||||||||||  | ||||||||||||||||||||||||||||||||||| ||||    
T  38767875 agaatcaattctacattaaattttatattttgattattacaacctattattttcct 38767930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 392 - 444
Target Start/End: Complemental strand, 28963884 - 28963832
Alignment:
Q  392 ctagaatcaattctcgaataaattttatattttgattattacaacctattatt 444  Q
    ||||||||||||||  | |||||||| ||||||||||||||||||||||||||    
T  28963884 ctagaatcaattctatattaaattttctattttgattattacaacctattatt 28963832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 444
Target Start/End: Original strand, 48407038 - 48407086
Alignment:
Q  396 aatcaattctcgaataaattttatattttgattattacaacctattatt 444  Q
    ||||||||||  | |||||||||||||||||||||||||| ||||||||    
T  48407038 aatcaattctacattaaattttatattttgattattacaatctattatt 48407086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 405
Target Start/End: Complemental strand, 39383052 - 39382990
Alignment:
Q  343 ctccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattct 405  Q
    ||||||||||| |||| | ||||||||||||||||||||| | | ||  ||||||||||||||    
T  39383052 ctccaaaagcaattctagttgaagctacaattcctaacttcttactttcctagaatcaattct 39382990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 131; Significance: 8e-68; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 234 - 444
Target Start/End: Complemental strand, 9868 - 9658
Alignment:
Q  234 gtgtgttaggttcaacttctacaccatttaaaagcacttttggtagcatcaaaagtgaaaactagcaattccaacaggtttgatttaacttctcaaaatc 333  Q
    ||||||| |||||| |||||| ||| || ||||||| || ||||||  |||||||||||||||  ||||||||||| ||||| || | ||||||||||||    
T  9868 gtgtgtttggttcagcttctatacctttcaaaagcatttctggtagtttcaaaagtgaaaacttacaattccaacatgtttggttcagcttctcaaaatc 9769  T
Q  334 aattctcatctccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattac 433  Q
    ||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9768 aattctcatcttcaaaaacaattctggatgaagctacaattcctaacttttgagttagctagaatcaattctccaataaattttatattttgattattac 9669  T
Q  434 aacctattatt 444  Q
    || ||||||||    
T  9668 aatctattatt 9658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 128; Significance: 5e-66; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 234 - 449
Target Start/End: Complemental strand, 50392994 - 50392779
Alignment:
Q  234 gtgtgttaggttcaacttctacaccatttaaaagcacttttggtagcatcaaaagtgaaaactagcaattccaacaggtttgatttaacttctcaaaatc 333  Q
    ||||||| | ||||||||||| |||  |||||||||||| ||||||| | ||||||||||||| |||||||| ||| ||||| || ||||||||||||||    
T  50392994 gtgtgtttgattcaacttctatacctcttaaaagcacttctggtagctttaaaagtgaaaacttgcaattccgacatgtttggttcaacttctcaaaatc 50392895  T
Q  334 aattctcatctccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattac 433  Q
    |||||||||||||||||| | ||||||||||| |||||||||||| ||||| ||||||||||||| ||||||| ||||||||||||||||| ||||||||    
T  50392894 aattctcatctccaaaagtaattctggatgaaactacaattcctagcttttaagttagctagaataaattctctaataaattttatatttttattattac 50392795  T
Q  434 aacctattattctcct 449  Q
    ||||||||||| ||||    
T  50392794 aacctattattttcct 50392779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 282 - 449
Target Start/End: Complemental strand, 45489237 - 45489070
Alignment:
Q  282 tcaaaagtgaaaactagcaattccaacaggtttgatttaacttctcaaaatcaattctcatctccaaaagcatttctggatgaagctacaattcctaact 381  Q
    |||||||||||||||| | ||||||||| ||||| ||||||||||||||||||||||||||||| ||||||| |||| | ||||||||||||||||||||    
T  45489237 tcaaaagtgaaaactaacgattccaacatgtttggtttaacttctcaaaatcaattctcatctctaaaagcaattctaggtgaagctacaattcctaact 45489138  T
Q  382 tttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctattattctcct 449  Q
    || |||||| |||||||||||| || |||||| |||||||||||||||||||||||||||||| ||||    
T  45489137 ttggagttaactagaatcaattttccaataaaatttatattttgattattacaacctattattttcct 45489070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 237 - 437
Target Start/End: Complemental strand, 44610995 - 44610795
Alignment:
Q  237 tgttaggttcaacttctacaccatttaaaagcacttttggtagcatcaaaagtgaaaactagcaattccaacaggtttgatttaacttctcaaaatcaat 336  Q
    |||| |||||| |||||||| |||| ||||||| || ||||||  |||||||||||||||||||||||||||| ||||| || | |||| ||||||||||    
T  44610995 tgtttggttcagcttctacatcattcaaaagcaattctggtagtttcaaaagtgaaaactagcaattccaacatgtttggttcagcttcacaaaatcaat 44610896  T
Q  337 tctcatctccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaac 436  Q
    ||||||||||||||||| |||||| ||||||||||||| ||| ||||||||||   |||||||||||||| | ||||||||||||||| |||||||||||    
T  44610895 tctcatctccaaaagcaattctggttgaagctacaatttctagcttttgagtttattagaatcaattctccattaaattttatattttaattattacaac 44610796  T
Q  437 c 437  Q
    |    
T  44610795 c 44610795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 242 - 417
Target Start/End: Original strand, 30809741 - 30809916
Alignment:
Q  242 ggttcaacttctacaccatttaaaagcacttttggtagcatcaaaagtgaaaactagcaattccaacaggtttgatttaacttctcaaaatcaattctca 341  Q
    |||||| ||| ||||||  | |||||||||| || |||| |||||||||||||||  ||||||||||| ||||| || | |||||||||||||| |||||    
T  30809741 ggttcagcttttacacctctcaaaagcacttctgatagcttcaaaagtgaaaacttccaattccaacatgtttggttcagcttctcaaaatcaactctca 30809840  T
Q  342 tctccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaatttt 417  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  30809841 tctccaaaagcaattctggatgaagctacaattcctagcttttgagttagctagaatcaattctccaataaatttt 30809916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 344 - 449
Target Start/End: Original strand, 40237333 - 40237438
Alignment:
Q  344 tccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctattat 443  Q
    |||||||||| || ||||||||| ||||||||||||||||| | ||| ||||||||||||||| |  ||||||||||||||||||||||||| | |||||    
T  40237333 tccaaaagcaattttggatgaagttacaattcctaacttttaaattaactagaatcaattctccatcaaattttatattttgattattacaatccattat 40237432  T
Q  444 tctcct 449  Q
    | ||||    
T  40237433 tttcct 40237438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 362 - 449
Target Start/End: Original strand, 11263743 - 11263830
Alignment:
Q  362 tgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctattattctcct 449  Q
    ||||||||||| ||||| ||||||  ||  |||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||    
T  11263743 tgaagctacaaatcctagcttttggctttcctagaatcaattctagattaaattttatattttgattattacaacctattattttcct 11263830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 347 - 449
Target Start/End: Original strand, 28883727 - 28883829
Alignment:
Q  347 aaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctattattct 446  Q
    ||||||| |||||  |||||||||||||| || |||||||||||  |||||||||||||| | |||||||||||||||||||||||  ||| |||||| |    
T  28883727 aaaagcaattctgactgaagctacaattcttagcttttgagttaaatagaatcaattctccattaaattttatattttgattattattacccattatttt 28883826  T
Q  447 cct 449  Q
    |||    
T  28883827 cct 28883829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 364 - 449
Target Start/End: Original strand, 42074446 - 42074531
Alignment:
Q  364 aagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctattattctcct 449  Q
    ||||||||||||||| ||||||| || ||| |||||||||||  | ||||||| ||||||||||||||||||||||||||| ||||    
T  42074446 aagctacaattcctagcttttgactttgctcgaatcaattctacattaaatttaatattttgattattacaacctattattttcct 42074531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 333 - 406
Target Start/End: Original strand, 44328682 - 44328755
Alignment:
Q  333 caattctcatctccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattctc 406  Q
    |||||||| |||||||||||| || ||| ||||||||||||||||| ||||||||||| |||||||||||||||    
T  44328682 caattctcttctccaaaagcaattttggctgaagctacaattcctagcttttgagttaactagaatcaattctc 44328755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 364 - 444
Target Start/End: Original strand, 51229781 - 51229861
Alignment:
Q  364 aagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctattatt 444  Q
    ||||||||||||||||||||||  ||  ||||||||||||||  | ||||||| |||||||||||||||||||||||||||    
T  51229781 aagctacaattcctaacttttggctttcctagaatcaattctacattaaatttaatattttgattattacaacctattatt 51229861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 343 - 449
Target Start/End: Original strand, 51407497 - 51407603
Alignment:
Q  343 ctccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctatta 442  Q
    ||||||||||| || ||| ||||||||||||| |||  ||||  |||| ||| ||||||||||| ||||||| ||||||||| ||||||||||| |||||    
T  51407497 ctccaaaagcaattttggttgaagctacaatttctagttttttggttaactaaaatcaattctccaataaatattatattttaattattacaacttatta 51407596  T
Q  443 ttctcct 449  Q
    || ||||    
T  51407597 ttttcct 51407603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 364 - 444
Target Start/End: Original strand, 28182424 - 28182504
Alignment:
Q  364 aagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctattatt 444  Q
    |||||| |||||||||||||||  ||  ||| ||||||||||  | |||||||||||||||||||||||||||||||||||    
T  28182424 aagctaaaattcctaacttttggctttcctataatcaattctacattaaattttatattttgattattacaacctattatt 28182504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 362 - 449
Target Start/End: Original strand, 45150650 - 45150737
Alignment:
Q  362 tgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctattattctcct 449  Q
    ||||||||||| ||||| ||||||  ||  ||||||||||||||  | ||||||||||||||||||| ||||||||||||||| ||||    
T  45150650 tgaagctacaaatcctagcttttggttttcctagaatcaattctacattaaattttatattttgattgttacaacctattattttcct 45150737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 367 - 444
Target Start/End: Original strand, 48181126 - 48181203
Alignment:
Q  367 ctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctattatt 444  Q
    |||||||||||| ||||||  ||  ||||||||||||||  | |||||||||||||||||||||| ||||||||||||    
T  48181126 ctacaattcctagcttttggctttcctagaatcaattctacattaaattttatattttgattattgcaacctattatt 48181203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 444
Target Start/End: Complemental strand, 53687442 - 53687341
Alignment:
Q  343 ctccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctatta 442  Q
    ||||||||||| |||| | | |||||||||||||||  |||||  ||  ||| ||||||||||  | ||||||| |||||||||||||||||||||||||    
T  53687442 ctccaaaagcaattcttgttaaagctacaattcctaggttttggcttttctaaaatcaattctacactaaatttaatattttgattattacaacctatta 53687343  T
Q  443 tt 444  Q
    ||    
T  53687342 tt 53687341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 392 - 444
Target Start/End: Complemental strand, 48254520 - 48254468
Alignment:
Q  392 ctagaatcaattctcgaataaattttatattttgattattacaacctattatt 444  Q
    ||||||||||||||  | |||||||| ||||||||||||||||||||||||||    
T  48254520 ctagaatcaattctatattaaattttctattttgattattacaacctattatt 48254468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 282 - 432
Target Start/End: Original strand, 21985337 - 21985488
Alignment:
Q  282 tcaaaagtgaaaactagcaattcca-acaggtttgatttaacttctcaaaatcaattctcatctccaaaagcatttctggatgaagctacaattcctaac 380  Q
    |||||||||||||  || |||| || ||| ||||| |||  ||| |||||| |||||||| | |||||||||| || |   |||||||| || |||||||    
T  21985337 tcaaaagtgaaaaaaagtaatttcacacatgtttgttttggcttttcaaaaacaattctcttgtccaaaagcaattttctttgaagctagaaatcctaac 21985436  T
Q  381 ttttgagttagctagaatcaattctcgaataaattttatattttgattatta 432  Q
    ||||||||| | |||||||||||||  | | ||||||||| |||| ||||||    
T  21985437 ttttgagtttggtagaatcaattctacatttaattttatactttggttatta 21985488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 444
Target Start/End: Original strand, 39251530 - 39251610
Alignment:
Q  364 aagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctattatt 444  Q
    ||||||||| ||||||||| | | ||   |||||||||||||  | |||||||| |||||||||||||||||| |||||||    
T  39251530 aagctacaaatcctaacttctaacttttttagaatcaattctacattaaattttctattttgattattacaacatattatt 39251610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 415 - 449
Target Start/End: Original strand, 30810813 - 30810847
Alignment:
Q  415 tttatattttgattattacaacctattattctcct 449  Q
    |||||||||||||||||||||||||||||| ||||    
T  30810813 tttatattttgattattacaacctattattttcct 30810847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 449
Target Start/End: Complemental strand, 33025863 - 33025757
Alignment:
Q  343 ctccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctatta 442  Q
    ||||||||||| ||||   | ||||||||||||||| ||||||  ||  ||| ||||||||||  |  |||||| ||||||| |||||||||| ||||||    
T  33025863 ctccaaaagcaattctccttaaagctacaattcctagcttttggctttcctataatcaattctacataaaatttaatattttaattattacaaactatta 33025764  T
Q  443 ttctcct 449  Q
    || ||||    
T  33025763 ttttcct 33025757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 432
Target Start/End: Complemental strand, 39267590 - 39267532
Alignment:
Q  374 tcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattatta 432  Q
    |||||||||||||||| | |||||||||||||  ||| ||||||||| |||| ||||||    
T  39267590 tcctaacttttgagtttggtagaatcaattctacaattaattttatactttggttatta 39267532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 405
Target Start/End: Original strand, 46797771 - 46797865
Alignment:
Q  312 tttgatttaacttctcaaaatcaattctcatctccaaaagcatttctggatg-aagctacaattcctaacttttgagttagctagaatcaattct 405  Q
    |||| |||| |||||||||||||||  ||||||  ||||||| || ||| || ||| ||||||| |||| |||||||||| ||||||| ||||||    
T  46797771 tttggtttaccttctcaaaatcaatcatcatcttaaaaagcaattatggttgaaagttacaatttctaatttttgagttaactagaattaattct 46797865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 405
Target Start/End: Original strand, 52692038 - 52692100
Alignment:
Q  343 ctccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattct 405  Q
    ||||||||||| |||| | ||||||||||||||||||||| | | ||  ||||||||||||||    
T  52692038 ctccaaaagcaattctagttgaagctacaattcctaacttcttactttcctagaatcaattct 52692100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 128; Significance: 5e-66; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 234 - 449
Target Start/End: Original strand, 41512068 - 41512283
Alignment:
Q  234 gtgtgttaggttcaacttctacaccatttaaaagcacttttggtagcatcaaaagtgaaaactagcaattccaacaggtttgatttaacttctcaaaatc 333  Q
    ||||||| |||||| |||||||||   |||||| ||||||| ||||| ||||||||||||||| ||||||||||||  |||| || | ||||||||||||    
T  41512068 gtgtgtttggttcagcttctacacatcttaaaaacacttttcgtagcttcaaaagtgaaaacttgcaattccaacatctttggttcagcttctcaaaatc 41512167  T
Q  334 aattctcatctccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattac 433  Q
    |||||||||||||||||  |||| | ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||    
T  41512168 aattctcatctccaaaaatatttttcgatgaagctacaattcctaacttttgagttagctataatcatttctccaataaattttatattttgattattac 41512267  T
Q  434 aacctattattctcct 449  Q
    ||||||||||| ||||    
T  41512268 aacctattattttcct 41512283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 237 - 444
Target Start/End: Complemental strand, 42137865 - 42137665
Alignment:
Q  237 tgttaggttcaacttctacaccatttaaaagcacttttggtagcatcaaaagtgaaaactagcaattccaacaggtttgatttaacttctcaaaatcaat 336  Q
    |||| |||||| |||||||||| |||||||||||||| | |||| ||||||||||||| ||||||||||||||  |||| ||||  ||||||||||||||    
T  42137865 tgtttggttcagcttctacaccctttaaaagcactttcgatagcttcaaaagtgaaaattagcaattccaacatatttggtttagtttctcaaaatcaat 42137766  T
Q  337 tctcatctccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaac 436  Q
    |||||||||||||||||       ||||| |||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||    
T  42137765 tctcatctccaaaagca-------atgaatctacaattcctagcttttgagttaactagaatcaattctccaataaattttatatttttattattacaac 42137673  T
Q  437 ctattatt 444  Q
     |||||||    
T  42137672 ttattatt 42137665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 234 - 444
Target Start/End: Original strand, 24075446 - 24075656
Alignment:
Q  234 gtgtgttaggttcaacttctacaccatttaaaagcacttttggtagcatcaaaagtgaaaactagcaattccaacaggtttgatttaacttctcaaaatc 333  Q
    ||||||| |||||| |||||||| | || ||||| | || ||||||  | ||||||||||||| |||||| ||||| ||||| || ||||| | ||||||    
T  24075446 gtgtgtttggttcagcttctacatctttcaaaagtatttctggtagttttaaaagtgaaaacttgcaatttcaacatgtttggttcaactttttaaaatc 24075545  T
Q  334 aattctcatctccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattac 433  Q
     |||||||||| |||||| | |||||||| ||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24075546 gattctcatcttcaaaagtaattctggataaagctacaattcctaacttttgatttaactagaatcaattctccaataaattttatattttgattattac 24075645  T
Q  434 aacctattatt 444  Q
    |||||||||||    
T  24075646 aacctattatt 24075656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 276 - 449
Target Start/End: Complemental strand, 3850997 - 3850824
Alignment:
Q  276 gtagcatcaaaagtgaaaactagcaattccaacaggtttgatttaacttctcaaaatcaattctcatctccaaaagcatttctggatgaagctacaattc 375  Q
    ||||| |||||||| |||||| |||||| ||||  ||||| || | |||||||||||||||||||||||||||| ||| || || ||||||||||||||     
T  3850997 gtagcttcaaaagtaaaaacttgcaatttcaacctgtttggttcagcttctcaaaatcaattctcatctccaaaggcaattatgaatgaagctacaattt 3850898  T
Q  376 ctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctattattctcct 449  Q
    ||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  3850897 ctagcttttgagttatctagaatcaattctccaataaattttatattttgattattacaacctattattttcct 3850824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 343 - 449
Target Start/End: Original strand, 11829110 - 11829216
Alignment:
Q  343 ctccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctatta 442  Q
    ||||||||||| |||||||||||| || |||||||||||||||||||| ||||||||||||||| | |||||||||||||||  ||||||||||| ||||    
T  11829110 ctccaaaagcaattctggatgaaggtataattcctaacttttgagttaactagaatcaattctccattaaattttatattttagttattacaacccatta 11829209  T
Q  443 ttctcct 449  Q
    || ||||    
T  11829210 ttttcct 11829216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 322 - 434
Target Start/End: Original strand, 1762230 - 1762342
Alignment:
Q  322 cttctcaaaatcaattctcatctccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatat 421  Q
    |||||||||||||||| | ||||||||||||| |||||| ||||||||||||||||||||||| ||||  ||||||||||||||| | |||||||||||     
T  1762230 cttctcaaaatcaattttaatctccaaaagcaattctggttgaagctacaattcctaacttttaagtttactagaatcaattctctattaaattttataa 1762329  T
Q  422 tttgattattaca 434  Q
    ||| ||| |||||    
T  1762330 tttaatttttaca 1762342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 355 - 444
Target Start/End: Complemental strand, 31100519 - 31100430
Alignment:
Q  355 ttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctattatt 444  Q
    |||||| ||||||||||||||||| ||||||||||| ||||||||||||||| | |||||||||||||||||||||||| ||| ||||||    
T  31100519 ttctggctgaagctacaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattattactacccattatt 31100430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 343 - 449
Target Start/End: Complemental strand, 11051227 - 11051121
Alignment:
Q  343 ctccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctatta 442  Q
    |||||||| || || ||| |||| ||||||||||||||||||| || | ||||||||||||||| | ||||||||||||||||||||||||||  |||||    
T  11051227 ctccaaaaacaattatggttgaatctacaattcctaacttttgggtaaactagaatcaattctccattaaattttatattttgattattacaaattatta 11051128  T
Q  443 ttctcct 449  Q
    || ||||    
T  11051127 ttttcct 11051121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 372 - 449
Target Start/End: Complemental strand, 46033713 - 46033636
Alignment:
Q  372 attcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctattattctcct 449  Q
    ||||| |||||||||||||  |||||||||||||| |||||||| |||||||||||||||||||| ||||||| ||||    
T  46033713 attcccaacttttgagttaattagaatcaattctccaataaattgtatattttgattattacaacatattattttcct 46033636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 328 - 429
Target Start/End: Original strand, 27065043 - 27065144
Alignment:
Q  328 aaaatcaattctcatctccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgat 427  Q
    |||| |||||||| ||| |||||||  || ||  |||||||||||||||||  |||||||||| ||| ||||||||||| | ||||||||||||||| ||    
T  27065043 aaaagcaattctcttcttcaaaagcgattttgactgaagctacaattcctagtttttgagttaactaaaatcaattctccattaaattttatattttaat 27065142  T
Q  428 ta 429  Q
    ||    
T  27065143 ta 27065144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 392 - 449
Target Start/End: Complemental strand, 13509956 - 13509899
Alignment:
Q  392 ctagaatcaattctcgaataaattttatattttgattattacaacctattattctcct 449  Q
    ||||||||||||||  | |||||||| |||||||||||||||||||||||||| ||||    
T  13509956 ctagaatcaattctacattaaattttctattttgattattacaacctattattttcct 13509899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 449
Target Start/End: Original strand, 27416610 - 27416703
Alignment:
Q  355 ttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctattattctcct 449  Q
    |||||| | ||| |||||||| ||  ||||| |||| ||| ||||||||||| ||||| ||||||| |||||||||||||| |||||||| ||||    
T  27416610 ttctggtttaagttacaattcttagtttttgggttaactataatcaattctccaataacttttata-tttgattattacaatctattattttcct 27416703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 444
Target Start/End: Original strand, 49430681 - 49430767
Alignment:
Q  358 tggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctattatt 444  Q
    |||||||| ||||||||  || ||||||  |||  |||| ||||||||| ||||||||||||||||| ||||||||||  |||||||    
T  49430681 tggatgaaactacaatttatagcttttggattaattagattcaattctccaataaattttatatttttattattacaatttattatt 49430767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 392 - 449
Target Start/End: Complemental strand, 47655904 - 47655847
Alignment:
Q  392 ctagaatcaattctcgaataaattttatattttgattattacaacctattattctcct 449  Q
    ||||||||||||||  | |||||||| |||||||| ||||||||||||||||| ||||    
T  47655904 ctagaatcaattctacattaaattttctattttgactattacaacctattattttcct 47655847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 444
Target Start/End: Original strand, 7385307 - 7385359
Alignment:
Q  392 ctagaatcaattctcgaataaattttatattttgattattacaacctattatt 444  Q
    |||||||||||| |  | |||||||| ||||||||||||||||||||||||||    
T  7385307 ctagaatcaattttacattaaattttttattttgattattacaacctattatt 7385359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 449
Target Start/End: Original strand, 44740228 - 44740284
Alignment:
Q  393 tagaatcaattctcgaataaattttatattttgattattacaacctattattctcct 449  Q
    |||||||||||||    ||||||||||||||| ||||||||||||||||||| ||||    
T  44740228 tagaatcaattctacgttaaattttatattttcattattacaacctattattttcct 44740284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 449
Target Start/End: Original strand, 50030928 - 50030967
Alignment:
Q  410 taaattttatattttgattattacaacctattattctcct 449  Q
    |||||||| |||||||||||||||||||||||||| ||||    
T  50030928 taaattttctattttgattattacaacctattattttcct 50030967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 405
Target Start/End: Complemental strand, 5271598 - 5271536
Alignment:
Q  343 ctccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattct 405  Q
    ||||||||||| |||| | ||||||||||||||||||||| | | ||  ||||||||||||||    
T  5271598 ctccaaaagcaattctagttgaagctacaattcctaacttcttactttcctagaatcaattct 5271536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 449
Target Start/End: Original strand, 6706214 - 6706271
Alignment:
Q  392 ctagaatcaattctcgaataaattttatattttgattattacaacctattattctcct 449  Q
    ||||||||||||||  | |||||||| |||||  ||||||||||||||||||| ||||    
T  6706214 ctagaatcaattctacattaaattttctatttcaattattacaacctattattttcct 6706271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 397 - 449
Target Start/End: Complemental strand, 11051108 - 11051056
Alignment:
Q  397 atcaattctcgaataaattttatattttgattattacaacctattattctcct 449  Q
    |||||||||| | ||||||||||||||||||||||| ||  ||||||| ||||    
T  11051108 atcaattctccattaaattttatattttgattattataaattattattttcct 11051056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 115; Significance: 3e-58; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 283 - 449
Target Start/End: Original strand, 2025486 - 2025652
Alignment:
Q  283 caaaagtgaaaactagcaattccaacaggtttgatttaacttctcaaaatcaattctcatctccaaaagcatttctggatgaagctacaattcctaactt 382  Q
    |||||||||||||| |||||| ||||| ||||| || | |||||||||||||||||||||||||||||||| || |||||||||||||||||||||  ||    
T  2025486 caaaagtgaaaacttgcaatttcaacatgtttggttcagcttctcaaaatcaattctcatctccaaaagcaattttggatgaagctacaattcctagttt 2025585  T
Q  383 ttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctattattctcct 449  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||    
T  2025586 ttgagttagctagaatcaattctccaatatattttatattttgattattacaacctattattttcct 2025652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 261 - 406
Target Start/End: Original strand, 7636393 - 7636538
Alignment:
Q  261 ttaaaagcacttttggtagcatcaaaagtgaaaactagcaattccaacaggtttgatttaacttctcaaaatcaattctcatctccaaaagcatttctgg 360  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||| |  || |||||||||||||||||||| ||||||| |||| |    
T  7636393 ttaaaagcacttttagtagcctcaaaagtgaaaactagcaattccaacatgtttgattcagattttcaaaatcaattctcatctctaaaagcaattcttg 7636492  T
Q  361 atgaagctacaattcctaacttttgagttagctagaatcaattctc 406  Q
     |||||||| ||||||||  ||||||||||  || |||||||||||    
T  7636493 ttgaagctataattcctagattttgagttaagtaaaatcaattctc 7636538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 333 - 436
Target Start/End: Original strand, 3590097 - 3590200
Alignment:
Q  333 caattctcatctccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattatta 432  Q
    |||||||| ||||||||| || |||||| ||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||| |||||||    
T  3590097 caattctcttctccaaaaacaattctggttgaagctacaattcctaacttttgagttaactagaatcaattctccattaaattttatattttaattatta 3590196  T
Q  433 caac 436  Q
    ||||    
T  3590197 caac 3590200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 343 - 444
Target Start/End: Original strand, 924134 - 924235
Alignment:
Q  343 ctccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctatta 442  Q
    ||||||||| | |||| | | ||||||||||||||||||||||  ||| |||||||||||||   |||| ||||||||||||||||||||||||||||||    
T  924134 ctccaaaagtaattctagttaaagctacaattcctaacttttggtttaactagaatcaattcgtcaatatattttatattttgattattacaacctatta 924233  T
Q  443 tt 444  Q
    ||    
T  924234 tt 924235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 364 - 436
Target Start/End: Original strand, 13015733 - 13015805
Alignment:
Q  364 aagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaac 436  Q
    ||||||||||||||||||||||||||| | ||||||||||||  | |||||||||||||||||||||||||||    
T  13015733 aagctacaattcctaacttttgagttaacgagaatcaattctacattaaattttatattttgattattacaac 13015805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 362 - 445
Target Start/End: Complemental strand, 37684247 - 37684164
Alignment:
Q  362 tgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctattattc 445  Q
    ||||| ||||||||||||||||||||||  ||||||||||| || || |||||||| ||||||| ||||||||||| |||||||    
T  37684247 tgaagatacaattcctaacttttgagttgactagaatcaatgctggattaaattttgtattttggttattacaacccattattc 37684164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 362 - 449
Target Start/End: Complemental strand, 35802390 - 35802303
Alignment:
Q  362 tgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctattattctcct 449  Q
    ||||||||||  ||||| ||||||  ||  ||||||||||||||  | ||||||||||||||||||||||||||||||||||| ||||    
T  35802390 tgaagctacatatcctagcttttggctttcctagaatcaattctacattaaattttatattttgattattacaacctattattttcct 35802303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 364 - 449
Target Start/End: Original strand, 33165845 - 33165931
Alignment:
Q  364 aagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttata-ttttgattattacaacctattattctcct 449  Q
    |||||| ||||||||| |||||  ||  ||||||||||||||| | ||||||||||| ||||||||||||||||| |||||| ||||    
T  33165845 aagctataattcctaatttttggtttttctagaatcaattctccattaaattttatatttttgattattacaacccattattttcct 33165931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 343 - 444
Target Start/End: Complemental strand, 35164446 - 35164345
Alignment:
Q  343 ctccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctatta 442  Q
    ||||||||||| ||||   |||||||||||||||||  |||||| ||  || |||||||||||  | ||||||| ||||||| ||||||||||| |||||    
T  35164446 ctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacttatta 35164347  T
Q  443 tt 444  Q
    ||    
T  35164346 tt 35164345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 392 - 449
Target Start/End: Complemental strand, 45276419 - 45276362
Alignment:
Q  392 ctagaatcaattctcgaataaattttatattttgattattacaacctattattctcct 449  Q
    ||||||||||||||  | |||||||| |||||||||||||||||||||||||| ||||    
T  45276419 ctagaatcaattctacattaaattttctattttgattattacaacctattattttcct 45276362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 410 - 449
Target Start/End: Complemental strand, 36821625 - 36821586
Alignment:
Q  410 taaattttatattttgattattacaacctattattctcct 449  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  36821625 taaattttatattttgattattacaacctattattttcct 36821586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 392 - 449
Target Start/End: Original strand, 8416744 - 8416801
Alignment:
Q  392 ctagaatcaattctcgaataaattttatattttgattattacaacctattattctcct 449  Q
    ||||||||||||||  | |||||||| |||||||||||||||||| ||||||| ||||    
T  8416744 ctagaatcaattctacattaaattttctattttgattattacaacttattattttcct 8416801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 392 - 449
Target Start/End: Complemental strand, 22936586 - 22936529
Alignment:
Q  392 ctagaatcaattctcgaataaattttatattttgattattacaacctattattctcct 449  Q
    ||||||||||||||  | |||||||| ||||| |||||||||||||||||||| ||||    
T  22936586 ctagaatcaattctacattaaattttctatttcgattattacaacctattattttcct 22936529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 427
Target Start/End: Original strand, 38023004 - 38023064
Alignment:
Q  367 ctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgat 427  Q
    ||||||||| || ||||| ||||| ||||||||||||||| | ||||| ||||||||||||    
T  38023004 ctacaattcttaccttttaagttaactagaatcaattctccattaaatcttatattttgat 38023064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 348
Target Start/End: Original strand, 38022937 - 38023003
Alignment:
Q  282 tcaaaagtgaaaactagcaattccaacaggtttgatttaacttctcaaaatcaattctcatctccaa 348  Q
    |||||||||||||| | | ||| ||||| ||||| ||||| || ||||||||||||||| |||||||    
T  38022937 tcaaaagtgaaaaccaactatttcaacatgtttggtttaatttttcaaaatcaattctcttctccaa 38023003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 110; Significance: 3e-55; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 253 - 442
Target Start/End: Complemental strand, 20838650 - 20838461
Alignment:
Q  253 tacaccatttaaaagcacttttggtagcatcaaaagtgaaaactagcaattccaacaggtttgatttaacttctcaaaatcaattctcatctccaaaagc 352  Q
    |||||| |||||||||| || |  || | |||||||||||||||||||||||||||| ||||| || | |||||||||||||||||||||||||||||||    
T  20838650 tacaccctttaaaagcaattctcataacttcaaaagtgaaaactagcaattccaacatgtttggttcagcttctcaaaatcaattctcatctccaaaagc 20838551  T
Q  353 atttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctatta 442  Q
    | |||||| ||||||||||| ||||||||||||||||  ||| ||||||||||| ||||||| |||||||||||||||||| ||||||||    
T  20838550 aattctggttgaagctacaaatcctaacttttgagtttactataatcaattctccaataaatcttatattttgattattacgacctatta 20838461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 327 - 449
Target Start/End: Original strand, 30134164 - 30134286
Alignment:
Q  327 caaaatcaattctcatctccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttga 426  Q
    ||||| |||||||| |||||||||||| |||||| ||||||||||||| ||| ||||||||||| | ||||||||||||| | ||||||||||||||| |    
T  30134164 caaaagcaattctcttctccaaaagcaattctggttgaagctacaatttctagcttttgagttaaccagaatcaattctccattaaattttatattttaa 30134263  T
Q  427 ttattacaacctattattctcct 449  Q
    |||||||||||||||||| ||||    
T  30134264 ttattacaacctattattttcct 30134286  T

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Target: chr6; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 345 - 449
Target Start/End: Original strand, 4146847 - 4146950
Alignment:
Q  345 ccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctattatt 444  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||  || |||||||||||||||||||||||||| ||||||    
T  4146847 ccaaaagcaattctggatgaagctacaattcctagcttttgagttaactagaatcaattctc-cattaattttatattttgattattacaacccattatt 4146945  T
Q  445 ctcct 449  Q
     ||||    
T  4146946 ttcct 4146950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 328 - 405
Target Start/End: Original strand, 27825042 - 27825119
Alignment:
Q  328 aaaatcaattctcatctccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattct 405  Q
    |||| |||||||| |||||||||||| || ||| ||||||||||||||||||||||| ||||| ||||||||||||||    
T  27825042 aaaagcaattctcttctccaaaagcaattatggttgaagctacaattcctaacttttcagttaactagaatcaattct 27825119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 392 - 449
Target Start/End: Original strand, 10683249 - 10683306
Alignment:
Q  392 ctagaatcaattctcgaataaattttatattttgattattacaacctattattctcct 449  Q
    ||||||||||||||  | |||||||| |||||||||||||||||||||||||| ||||    
T  10683249 ctagaatcaattctacattaaattttctattttgattattacaacctattattttcct 10683306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 282 - 432
Target Start/End: Complemental strand, 4689 - 4540
Alignment:
Q  282 tcaaaagtgaaaactagcaattccaacaggtttgatttaacttctcaaaatcaattctcatctccaaaagcatttctggatgaagctacaattcctaact 381  Q
    |||||||||||||| ||||||| |||||| |||| ||||||||||||||||||||||| | ||||||||| | |||||  ||||||||||||||||| ||    
T  4689 tcaaaagtgaaaacaagcaatttcaacag-tttggtttaacttctcaaaatcaattcttagctccaaaagtaattctgattgaagctacaattcctagct 4591  T
Q  382 tttgagttagctagaatcaattctcgaataaattttatattttgattatta 432  Q
    ||||||||| ||| |||||||| |  | |||||||| ||||||| ||||||    
T  4590 tttgagttaactacaatcaattatgcattaaattttctattttggttatta 4540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 282 - 432
Target Start/End: Original strand, 3409 - 3558
Alignment:
Q  282 tcaaaagtgaaaactagcaattccaacaggtttgatttaacttctcaaaatcaattctcatctccaaaagcatttctggatgaagctacaattcctaact 381  Q
    |||||||||||||| ||||||| |||||| |||| ||||||||||||||||||||||| | ||||||||| | |||||  ||||||||||||||||| ||    
T  3409 tcaaaagtgaaaacaagcaatttcaacag-tttggtttaacttctcaaaatcaattcttagctccaaaagtaattctgattgaagctacaattcctagct 3507  T
Q  382 tttgagttagctagaatcaattctcgaataaattttatattttgattatta 432  Q
    ||||||||| ||| |||||||| |  | |||||||| ||||||| ||||||    
T  3508 tttgagttaactacaatcaattatgcattaaattttctattttggttatta 3558  T

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Target: scaffold0097 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 364 - 449
Target Start/End: Complemental strand, 33106 - 33021
Alignment:
Q  364 aagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctattattctcct 449  Q
    ||||||||| | ||||||||||  ||  ||||||||||||||  | ||||||||||||||||||||||||||||||||||| ||||    
T  33106 aagctacaaattctaacttttggtttttctagaatcaattctaaattaaattttatattttgattattacaacctattattttcct 33021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 392 - 449
Target Start/End: Original strand, 37777 - 37834
Alignment:
Q  392 ctagaatcaattctcgaataaattttatattttgattattacaacctattattctcct 449  Q
    ||||||||||||||  | |||||||| |||||||||||||||||||||||||| ||||    
T  37777 ctagaatcaattctaaattaaattttctattttgattattacaacctattattttcct 37834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 364 - 449
Target Start/End: Original strand, 91590 - 91675
Alignment:
Q  364 aagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctattattctcct 449  Q
    ||||||||||||||||||||||  ||   |||||  ||||||  | ||| ||||||||||||||||||||||||||||||| ||||    
T  91590 aagctacaattcctaacttttggctttcatagaacaaattctacattaacttttatattttgattattacaacctattattttcct 91675  T

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Target: scaffold0069 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 442
Target Start/End: Original strand, 16848 - 16947
Alignment:
Q  343 ctccaaaagcatttctggatgaagctacaattcctaacttttgagttagctagaatcaattctcgaataaattttatattttgattattacaacctatta 442  Q
    ||||||||||| ||||   | |||||||||||||||| |||||  ||   |||||  ||||||  | ||| |||||||||||||||||||||||||||||    
T  16848 ctccaaaagcaattctaattaaagctacaattcctaatttttggttttcatagaacaaattctacattaacttttatattttgattattacaacctatta 16947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0808 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0808
Description:

Target: scaffold0808; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 449
Target Start/End: Original strand, 4176 - 4229
Alignment:
Q  396 aatcaattctcgaataaattttatattttgattattacaacctattattctcct 449  Q
    ||||||||||  | |||||||| |||||| ||||||||||||||||||| ||||    
T  4176 aatcaattctacattaaattttctatttttattattacaacctattattttcct 4229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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