View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16817_high_25 (Length: 429)
Name: NF16817_high_25
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16817_high_25 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 2 - 412
Target Start/End: Original strand, 9895742 - 9896145
Alignment:
| Q |
2 |
catcactatctactcttcagaccagaccacatatcgtaagctagagctaaaatttgcaggaagcagtcataggaaaactctaccagaaaaaatatacaat |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9895742 |
catcactatctactcttcagaccagaccacatatcgtaagctagagctaaaatttgcaggaagcagtcatagaaaaactctaccagaaaaaatatacaat |
9895841 |
T |
|
| Q |
102 |
tcataggaaactgtacaagaaaacaatatacggggtaaaaaatttaaaacactaaatgacagattttcatgcttcaaatccaattattgccatctagtat |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
9895842 |
tcataggaaactgtacaagaaaacaatatacggggtaaaaaatttaaaacactaaatgacagtttttcatgcttcaaatccaattattgc-------tat |
9895934 |
T |
|
| Q |
202 |
cttcttccaacagggctcaaatacccatcactttgaatcattatcatcagcctgnnnnnnnnnnnnnnnnnnnnnnncattaattcatatgcttcattta |
301 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9895935 |
cttcttccaacagagctcaaatacccatcactttgaatcattatcatcagcctgaaaataaaaataaataaaaaatacattaattcatatgcttcattta |
9896034 |
T |
|
| Q |
302 |
agccctaagnnnnnnnttgcacccattatatgtaaagtaattatcacaattccaaacacataaaacatcagttaaatcaaacgccaaggctagggtgagt |
401 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9896035 |
agccctaagaaaaaaattgcacccattatatgtaaagtaattatcacaattccaaacacataaaacatcagttaaatcaaacgccaaggctagggtgagt |
9896134 |
T |
|
| Q |
402 |
gagtaaggtat |
412 |
Q |
| |
|
||||||||||| |
|
|
| T |
9896135 |
gagtaaggtat |
9896145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University