View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16817_high_27 (Length: 416)

Name: NF16817_high_27
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16817_high_27
NF16817_high_27
[»] chr2 (19 HSPs)
chr2 (224-367)||(28207907-28208051)
chr2 (1-93)||(2841010-2841102)
chr2 (1-93)||(30732030-30732122)
chr2 (1-93)||(32918102-32918194)
chr2 (1-93)||(43850071-43850163)
chr2 (8-139)||(28208158-28208282)
chr2 (1-93)||(30734010-30734102)
chr2 (4-87)||(17225659-17225743)
chr2 (1-93)||(35701911-35702003)
chr2 (3-93)||(9020869-9020960)
chr2 (1-60)||(8912989-8913050)
chr2 (8-84)||(6471709-6471785)
chr2 (1-93)||(9030420-9030512)
chr2 (8-88)||(10763878-10763958)
chr2 (1-49)||(17275897-17275945)
chr2 (377-416)||(28207830-28207869)
chr2 (42-88)||(9032080-9032126)
chr2 (1-93)||(8973334-8973427)
chr2 (1-93)||(19232393-19232484)
[»] chr4 (12 HSPs)
chr4 (1-93)||(49106522-49106614)
chr4 (1-93)||(11652385-11652477)
chr4 (1-93)||(50077192-50077284)
chr4 (1-93)||(49108626-49108718)
chr4 (3-93)||(26998735-26998825)
chr4 (1-93)||(3461135-3461227)
chr4 (9-93)||(26984668-26984752)
chr4 (1-87)||(21503706-21503792)
chr4 (6-79)||(35806165-35806238)
chr4 (8-51)||(54677590-54677633)
chr4 (3-93)||(48205853-48205943)
chr4 (9-61)||(2932220-2932272)
[»] chr5 (5 HSPs)
chr5 (1-93)||(7524990-7525082)
chr5 (1-93)||(1716444-1716537)
chr5 (1-93)||(3643662-3643754)
chr5 (6-88)||(16037885-16037966)
chr5 (3-88)||(4103272-4103357)
[»] chr8 (12 HSPs)
chr8 (1-93)||(41841145-41841237)
chr8 (1-93)||(40054334-40054426)
chr8 (1-93)||(10944392-10944484)
chr8 (1-93)||(44879005-44879097)
chr8 (1-93)||(44880824-44880916)
chr8 (15-93)||(42555090-42555168)
chr8 (16-93)||(37682079-37682156)
chr8 (34-100)||(42092035-42092101)
chr8 (1-55)||(42554655-42554709)
chr8 (3-93)||(44582875-44582965)
chr8 (4-49)||(33577710-33577755)
chr8 (1-93)||(37679777-37679869)
[»] chr1 (20 HSPs)
chr1 (1-93)||(14654333-14654425)
chr1 (1-93)||(14664124-14664216)
chr1 (1-93)||(14669702-14669794)
chr1 (1-93)||(14681621-14681713)
chr1 (1-93)||(14683772-14683864)
chr1 (1-93)||(14706110-14706202)
chr1 (1-93)||(14708600-14708692)
chr1 (1-93)||(38175523-38175615)
chr1 (1-93)||(14652547-14652639)
chr1 (1-93)||(14662338-14662430)
chr1 (1-93)||(14674503-14674595)
chr1 (1-93)||(14679881-14679973)
chr1 (1-93)||(14716313-14716405)
chr1 (1-93)||(33988092-33988184)
chr1 (8-100)||(11872481-11872574)
chr1 (1-93)||(28366191-28366284)
chr1 (6-60)||(7448425-7448479)
chr1 (20-93)||(14676654-14676727)
chr1 (9-93)||(14667112-14667196)
chr1 (40-93)||(37422191-37422244)
[»] chr6 (6 HSPs)
chr6 (1-93)||(10791645-10791737)
chr6 (1-93)||(10795883-10795975)
chr6 (1-60)||(11333285-11333344)
chr6 (3-93)||(8875711-8875803)
chr6 (5-60)||(13136609-13136664)
chr6 (1-88)||(30521269-30521356)
[»] chr7 (1 HSPs)
chr7 (1-60)||(27134566-27134625)


Alignment Details
Target: chr2 (Bit Score: 81; Significance: 5e-38; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 224 - 367
Target Start/End: Complemental strand, 28208051 - 28207907
Alignment:
Q  224 acttttgagtgggaaaatcttattt-ggagtcaaaagctacaaaggatgtgttttgaaatgtggtgcggttagagaatttcaccgtaaaaattaacggtg 322  Q
    ||||||||||| ||||||||| ||| |||||||||||||| ||| |||||||||||||||||||| ||| ||||||||||||| ||| ||| ||||||||    
T  28208051 acttttgagtgtgaaaatcttcttttggagtcaaaagctataaaagatgtgttttgaaatgtggtacggctagagaatttcacggtagaaactaacggtg 28207952  T
Q  323 aagctaaatcttctagtttttacgacgaaaattgcattgcaacgc 367  Q
    ||| | || |||||| |||| ||||||||||||||||||||||||    
T  28207951 aagatgaaacttctaattttcacgacgaaaattgcattgcaacgc 28207907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 2841010 - 2841102
Alignment:
Q  1 ccccctcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    ||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||| ||| || |||| ||||||||||||||| ||||    
T  2841010 ccccctcaaaaaagtaatttaatatcgtgtgatccattgaaccacatatcagatattaaactgataagaacagatactacacttgatcttagc 2841102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 30732122 - 30732030
Alignment:
Q  1 ccccctcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    ||||||||||||||||||||||||||||||||  |||| | |||||||| |||||||||| ||| || |||| ||||||||||||||| ||||    
T  30732122 ccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatattagatattaaactgataagaacagatactacacttgatcttagc 30732030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 32918194 - 32918102
Alignment:
Q  1 ccccctcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    |||||||||||||||||||||||||||||||   |||| | ||||||||||||||||||| ||| || |||| ||||||||||||||| ||||    
T  32918194 ccccctcaaaaaagtaatttaatatcgtgtggaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagc 32918102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 43850163 - 43850071
Alignment:
Q  1 ccccctcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    ||||||||||||||| |||||||||| ||||| ||||| | ||||||||||||||||||| ||| || |||| ||||||||||||||| ||||    
T  43850163 ccccctcaaaaaagtgatttaatatcatgtgactcattgggccacatatcagatattaaactgataagaacagatactacacttgatcttagc 43850071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 28208282 - 28208158
Alignment:
Q  8 aaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc-aaaaggcttcgat 106  Q
    |||||||||||||||||  |  ||| |||||  | ||||||||||||||||||||||        ||||| |||||||||| |||| |||||||||||||    
T  28208282 aaaaaagtaatttaataatgaatgactcattgaatcacatatcagatattaaattga--------aatacgacacttgatcttagccaaaaggcttcgat 28208191  T
Q  107 aataaacagttaacagtgttataggaaaaagat 139  Q
    ||||||| |||||||||||||||||||||||||    
T  28208190 aataaaccgttaacagtgttataggaaaaagat 28208158  T

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Target: chr2; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 30734102 - 30734010
Alignment:
Q  1 ccccctcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    |||||| ||||||||||||||||||| |||||  |||| | ||||||||||||||||||| ||| || |||| ||||||||||||||| ||||    
T  30734102 ccccctaaaaaaagtaatttaatatcatgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagc 30734010  T

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Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 17225659 - 17225743
Alignment:
Q  4 cctcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattga-caaaaacaaatactacacttgat 87  Q
    ||||||||||||||||||||||||| ||||||||| ||||| ||||||| |||||||  ||  ||||||| ||||||||||||||    
T  17225659 cctcaaaaaagtaatttaatatcgtatgattcattggaccagatatcagttattaaaccgataaaaaacagatactacacttgat 17225743  T

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Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 35702003 - 35701911
Alignment:
Q  1 ccccctcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    |||||||||||||||||  ||||||||||||| |  || | |||||||||| |||||||| | | |||||||||||| |||||||||| ||||    
T  35702003 ccccctcaaaaaagtaaactaatatcgtgtgacttgttggcccacatatcaaatattaaactaataaaaacaaataccacacttgatcttagc 35701911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 93
Target Start/End: Complemental strand, 9020960 - 9020869
Alignment:
Q  3 ccctcaaaaaagtaatttaatatcgt-gtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    ||||||||||||||||||||||  || ||||  |||| | |||||| |||||||||||||||| || |||| ||||||||||||||| ||||    
T  9020960 ccctcaaaaaagtaatttaatactgtagtgacccattgggccacatctcagatattaaattgataagaacagatactacacttgatcttagc 9020869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 8913050 - 8912989
Alignment:
Q  1 ccccctcaaaaaagtaatttaatatc--gtgtgattcattagaccacatatcagatattaaa 60  Q
    ||||||||||||||||||||||||||  |||||||||||| |||||||||| | ||||||||    
T  8913050 ccccctcaaaaaagtaatttaatatcatgtgtgattcattggaccacatattatatattaaa 8912989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 6471709 - 6471785
Alignment:
Q  8 aaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacactt 84  Q
    |||||||||| |||||||| |||||| |||||||||  ||||||||||||||| | | || |||| |||||||||||    
T  6471709 aaaaaagtaacttaatatcatgtgatccattagaccgtatatcagatattaaactaataagaacatatactacactt 6471785  T

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Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 9030512 - 9030420
Alignment:
Q  1 ccccctcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    ||||||||||||||||||||||||  ||||||  ||||   |||| | ||| |||||||||||| || |||| ||||||||||||||| ||||    
T  9030512 ccccctcaaaaaagtaatttaatactgtgtgacccattgagccacttctcaaatattaaattgataagaacagatactacacttgatcttagc 9030420  T

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Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 10763878 - 10763958
Alignment:
Q  8 aaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatc 88  Q
    |||||||||||||||||| || ||   ||||   ||||||||||||||||||| ||| || |||| |||||||||||||||    
T  10763878 aaaaaagtaatttaatattgtatggaccattgatccacatatcagatattaaactgataagaacatatactacacttgatc 10763958  T

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Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 17275945 - 17275897
Alignment:
Q  1 ccccctcaaaaaagtaatttaatatcgtgtgattcattagaccacatat 49  Q
    |||||||||||| |||||| ||||||||||||| |||| ||||||||||    
T  17275945 ccccctcaaaaatgtaattcaatatcgtgtgatccattggaccacatat 17275897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 377 - 416
Target Start/End: Complemental strand, 28207869 - 28207830
Alignment:
Q  377 caaacatacacttataacgagtactaaaattgaaggaaga 416  Q
    |||||||||||||||||| |||||||||| ||||||||||    
T  28207869 caaacatacacttataacaagtactaaaaatgaaggaaga 28207830  T

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Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 88
Target Start/End: Complemental strand, 9032126 - 9032080
Alignment:
Q  42 ccacatatcagatattaaattgacaaaaacaaatactacacttgatc 88  Q
    ||||||||||||||||||| ||| || |||| |||||||||||||||    
T  9032126 ccacatatcagatattaaactgataagaacagatactacacttgatc 9032080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 8973427 - 8973334
Alignment:
Q  1 ccccctcaaaaaagtaatttaatatcgt-gtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    |||||| |||||||||||||||||| || ||||  |||| | ||||  ||||||||||||| | | || |||| ||||||||||||||| ||||    
T  8973427 cccccttaaaaaagtaatttaatattgttgtgacccattgggccactaatcagatattaaactaataagaacagatactacacttgatcttagc 8973334  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 19232393 - 19232484
Alignment:
Q  1 ccccctcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    |||||||||||| |||||||||||| ||||||  || | |  |||||||||| ||||||| ||| || |||| ||| ||||||||||| ||||    
T  19232393 ccccctcaaaaaggtaatttaatattgtgtgacccaatgggtcacatatcag-tattaaactgataagaacagatattacacttgatcttagc 19232484  T

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Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 49106522 - 49106614
Alignment:
Q  1 ccccctcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||| || |||| ||||||||||||||| ||||    
T  49106522 ccccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagc 49106614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 11652385 - 11652477
Alignment:
Q  1 ccccctcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    ||||||||||||| ||||||||||||||||||  |||| | ||||||||||||||||||| ||| || |||| ||||||||||||||| ||||    
T  11652385 ccccctcaaaaaaataatttaatatcgtgtgacccattgggccacatatcagatattaaactgataagaacagatactacacttgatcttagc 11652477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 50077192 - 50077284
Alignment:
Q  1 ccccctcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    |||||||||||||||||||||||||| |||||  |||| || |||||||||||||||||| ||| || |||| ||||||||||||||| ||||    
T  50077192 ccccctcaaaaaagtaatttaatatcatgtgaaccattggaacacatatcagatattaaactgataagaacagatactacacttgatcttagc 50077284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 49108626 - 49108718
Alignment:
Q  1 ccccctcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    ||||||||||||||||||||||||||||||||  ||||    |||||||||||||||||| ||| || |||| ||||||||||||||| ||||    
T  49108626 ccccctcaaaaaagtaatttaatatcgtgtgacccattgagtcacatatcagatattaaactgataagaacagatactacacttgatcttagc 49108718  T

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Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 3 - 93
Target Start/End: Original strand, 26998735 - 26998825
Alignment:
Q  3 ccctcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    |||| ||||||||||||||||||||||||   |||| | ||||||||||||||||||| ||| || |||| ||||||||||||||| ||||    
T  26998735 ccctaaaaaaagtaatttaatatcgtgtggaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagc 26998825  T

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Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 3461135 - 3461227
Alignment:
Q  1 ccccctcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    |||||| |||||||||||||||||||||||||  ||||    |||||||||||||||||| ||| || |||| ||||||||||||||| ||||    
T  3461135 cccccttaaaaaagtaatttaatatcgtgtgacccattgagtcacatatcagatattaaactgataagaacagatactacacttgatcttagc 3461227  T

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Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 93
Target Start/End: Original strand, 26984668 - 26984752
Alignment:
Q  9 aaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    |||||||||||||||||||||||   |||| | ||||||||||||||||||| ||| || |||| ||||||||||||||| ||||    
T  26984668 aaaaagtaatttaatatcgtgtggaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagc 26984752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 21503792 - 21503706
Alignment:
Q  1 ccccctcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgat 87  Q
    ||||||||||||| ||||||||||||||||||   |||   ||||||||||||||||||| ||| || |||| ||||||||||||||    
T  21503792 ccccctcaaaaaaataatttaatatcgtgtgacctattgagccacatatcagatattaaactgataagaacagatactacacttgat 21503706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 35806238 - 35806165
Alignment:
Q  6 tcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatacta 79  Q
    |||||||||||||||||||||||| || ||||||||  |||||||| |||||||| ||| || |||||||||||    
T  35806238 tcaaaaaagtaatttaatatcgtgcgactcattagattacatatcatatattaaactgataagaacaaatacta 35806165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 54677633 - 54677590
Alignment:
Q  8 aaaaaagtaatttaatatcgtgtgattcattagaccacatatca 51  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  54677633 aaaaaagtaatttaatatcgtgtgatccattagaccacatatca 54677590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 93
Target Start/End: Complemental strand, 48205943 - 48205853
Alignment:
Q  3 ccctcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    |||||||||||||||||||||||| ||| |  || | | |||||||| |||||||||||| | || |||| ||||||||||| ||| ||||    
T  48205943 ccctcaaaaaagtaatttaatatcatgtaaaccaatggtccacatataagatattaaattaataagaacagatactacacttaatcttagc 48205853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 2932220 - 2932272
Alignment:
Q  9 aaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaat 61  Q
    |||||||||||| ||||||| ||| ||||||  |||||||| |||||||||||    
T  2932220 aaaaagtaattttatatcgtatgaatcattaatccacatataagatattaaat 2932272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 7525082 - 7524990
Alignment:
Q  1 ccccctcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    ||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||| ||| || |||| ||||||||||||||| ||||    
T  7525082 ccccctcaaaaaagtaatttaatatcgtgtgatccattggatcacatatcagatattaaactgataagaacagatactacacttgatcttagc 7524990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 1716444 - 1716537
Alignment:
Q  1 ccccctcaaaaaagtaatttaatatcgtgtgattcattag-accacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    |||||| |||||||||||||||||||||||||  |||| | |||||||||||||||||||| ||| || |||| ||||||||||||||| ||||    
T  1716444 cccccttaaaaaagtaatttaatatcgtgtgacccatttggaccacatatcagatattaaactgataagaacagatactacacttgatcttagc 1716537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 3643754 - 3643662
Alignment:
Q  1 ccccctcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    |||||| |||||||||||||||||||||||||  || | | ||||||||||||||||||| ||| || |||| ||||||||||||||| ||||    
T  3643754 cccccttaaaaaagtaatttaatatcgtgtgacccaatgggccacatatcagatattaaactgataagaacagatactacacttgatcttagc 3643662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 6 - 88
Target Start/End: Complemental strand, 16037966 - 16037885
Alignment:
Q  6 tcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatc 88  Q
    ||||||||||||||||||||||| |||  ||||||||||| ||||| |||||||  | | || ||||||||||||||||||||    
T  16037966 tcaaaaaagtaatttaatatcgtttgacccattagaccac-tatcaaatattaagataataagaacaaatactacacttgatc 16037885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 4103357 - 4103272
Alignment:
Q  3 ccctcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatc 88  Q
    |||| ||||||| ||||||||||||||||    ||| | ||||||||||||||||||| ||| || |||| |||||||||||||||    
T  4103357 ccctaaaaaaagcaatttaatatcgtgtggactattgggccacatatcagatattaaactgataagaacagatactacacttgatc 4103272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 41841145 - 41841237
Alignment:
Q  1 ccccctcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    |||| |||||||||||||||||||||||||||  |||| ||||||||||||||||||||| ||| || |||| ||||||||||||||| ||||    
T  41841145 ccccatcaaaaaagtaatttaatatcgtgtgacccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagc 41841237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 40054426 - 40054334
Alignment:
Q  1 ccccctcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    |||||||||||||||||||||||||||| |||  |||| | ||||||||||||||||||| ||| || |||| ||||||||||||||| ||||    
T  40054426 ccccctcaaaaaagtaatttaatatcgtatgacccattgggccacatatcagatattaaactgataagaacagatactacacttgatcttagc 40054334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 10944392 - 10944484
Alignment:
Q  1 ccccctcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    |||| |||||||||||||||||||||||||||  |||| | |||||||| |||||||||| ||| || |||| ||||||||||||||| ||||    
T  10944392 ccccatcaaaaaagtaatttaatatcgtgtgaaccatttgtccacatataagatattaaactgataagaacagatactacacttgatcttagc 10944484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 44879097 - 44879005
Alignment:
Q  1 ccccctcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    |||||||||||||||||||||||||| |||||  ||||   ||||||||||||||||||| ||| || |||| ||||||||||||||| ||||    
T  44879097 ccccctcaaaaaagtaatttaatatcatgtgacccattgagccacatatcagatattaaactgataagaacagatactacacttgatcttagc 44879005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 44880824 - 44880916
Alignment:
Q  1 ccccctcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    |||||||||||||||||||||||||| |||||  ||||   ||||||||||||||||||| ||| || |||| ||||||||||||||| ||||    
T  44880824 ccccctcaaaaaagtaatttaatatcatgtgacccattgagccacatatcagatattaaactgataagaacagatactacacttgatcttagc 44880916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 42555090 - 42555168
Alignment:
Q  15 taatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    ||||||||||||||||||||||||  ||||||||||| |||||||| ||| ||||||| || || ||||||||| ||||    
T  42555090 taatttaatatcgtgtgattcattgaaccacatatcaaatattaaactgataaaaacagattctgcacttgatcttagc 42555168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 37682156 - 37682079
Alignment:
Q  16 aatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    ||||||||||||||||   |||| | ||||||||||||||||||| ||| || |||| ||||||||||||||| ||||    
T  37682156 aatttaatatcgtgtggaccattggcccacatatcagatattaaactgataagaacagatactacacttgatcttagc 37682079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 42092101 - 42092035
Alignment:
Q  34 tcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagcaaaaggc 100  Q
    |||||| |||||||||||||||||||| ||| || |||||||| ||||||| ||  |||||||||||    
T  42092101 tcattaaaccacatatcagatattaaactgataagaacaaatattacacttaattttagcaaaaggc 42092035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 42554655 - 42554709
Alignment:
Q  1 ccccctcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagata 55  Q
    ||||||||||||| |||||||||||||||| |||||||   ||||||||||||||    
T  42554655 ccccctcaaaaaaataatttaatatcgtgtaattcattgacccacatatcagata 42554709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 93
Target Start/End: Complemental strand, 44582965 - 44582875
Alignment:
Q  3 ccctcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    |||||||||||||||||||||||| |   || ||||   | ||||||||||||||||| ||| || |||| ||||||||||||||| ||||    
T  44582965 ccctcaaaaaagtaatttaatatcatagaatccattgagctacatatcagatattaaactgataagaacagatactacacttgatcttagc 44582875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 33577710 - 33577755
Alignment:
Q  4 cctcaaaaaagtaatttaatatcgtgtgattcattagaccacatat 49  Q
    |||||||||||||||||||||| |||||| ||||||| ||||||||    
T  33577710 cctcaaaaaagtaatttaatattgtgtgactcattaggccacatat 33577755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 37679869 - 37679777
Alignment:
Q  1 ccccctcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    ||||||||| |||  |||||||||||  |||   |||| | ||||||||||||||||||| ||| || |||| ||||||||||||||| ||||    
T  37679869 ccccctcaataaataaatttaatatcaagtggaccattggcccacatatcagatattaaactgataagaacagatactacacttgatcttagc 37679777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 14654333 - 14654425
Alignment:
Q  1 ccccctcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    ||||||||||||||||||||||||||||||||  |||| | ||||||||||||||||||| ||| || |||| ||||||||||||||| ||||    
T  14654333 ccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagc 14654425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 14664124 - 14664216
Alignment:
Q  1 ccccctcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    ||||||||||||||||||||||||||||||||  |||| | ||||||||||||||||||| ||| || |||| ||||||||||||||| ||||    
T  14664124 ccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagc 14664216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 14669702 - 14669794
Alignment:
Q  1 ccccctcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    ||||||||||||||||||||||||||||||||  |||| | ||||||||||||||||||| ||| || |||| ||||||||||||||| ||||    
T  14669702 ccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagc 14669794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 14681713 - 14681621
Alignment:
Q  1 ccccctcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    ||||||||||||||||||||||||||||||||  |||| | ||||||||||||||||||| ||| || |||| ||||||||||||||| ||||    
T  14681713 ccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagc 14681621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 14683864 - 14683772
Alignment:
Q  1 ccccctcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    ||||||||||||||||||||||||||||||||  |||| | ||||||||||||||||||| ||| || |||| ||||||||||||||| ||||    
T  14683864 ccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagc 14683772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 14706202 - 14706110
Alignment:
Q  1 ccccctcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    ||||||||||||||||||||||||||||||||  |||| | ||||||||||||||||||| ||| || |||| ||||||||||||||| ||||    
T  14706202 ccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagc 14706110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 14708692 - 14708600
Alignment:
Q  1 ccccctcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    ||||||||||||||||||||||||||||||||  |||| | ||||||||||||||||||| ||| || |||| ||||||||||||||| ||||    
T  14708692 ccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagc 14708600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 38175523 - 38175615
Alignment:
Q  1 ccccctcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    ||||||||||||||||||||||||||||||||  |||| || |||||||||||||||||| ||| || |||| ||||||||||||||| ||||    
T  38175523 ccccctcaaaaaagtaatttaatatcgtgtgacccattggaacacatatcagatattaaactgataagaacagatactacacttgatcttagc 38175615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 14652639 - 14652547
Alignment:
Q  1 ccccctcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    |||||||||||||||||||||||||||||||   |||| | ||||||||||||||||||| ||| || |||| ||||||||||||||| ||||    
T  14652639 ccccctcaaaaaagtaatttaatatcgtgtggaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagc 14652547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 14662430 - 14662338
Alignment:
Q  1 ccccctcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    |||||||||||||||||||||||||||||||   |||| | ||||||||||||||||||| ||| || |||| ||||||||||||||| ||||    
T  14662430 ccccctcaaaaaagtaatttaatatcgtgtggaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagc 14662338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 14674595 - 14674503
Alignment:
Q  1 ccccctcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    |||||||||||||||||||||||||| |||||  |||| | ||||||||||||||||||| ||| || |||| ||||||||||||||| ||||    
T  14674595 ccccctcaaaaaagtaatttaatatcatgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagc 14674503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 14679973 - 14679881
Alignment:
Q  1 ccccctcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    |||||||||||||||||||||||||| |||||  |||| | ||||||||||||||||||| ||| || |||| ||||||||||||||| ||||    
T  14679973 ccccctcaaaaaagtaatttaatatcatgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagc 14679881  T

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Target: chr1; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 14716405 - 14716313
Alignment:
Q  1 ccccctcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    ||||||||||||||||||||||||||||||||  |||| | |||||||| |||||||||| ||| || |||| ||||||||||||||| ||||    
T  14716405 ccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatattagatattaaactgataagaacagatactacacttgatcttagc 14716313  T

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Target: chr1; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 33988184 - 33988092
Alignment:
Q  1 ccccctcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    |||||| ||||||||||||||||||||||||| |||||   ||||||||||||||||||| ||| || |||| ||||||||||||||| ||||    
T  33988184 cccccttaaaaaagtaatttaatatcgtgtgactcattgagccacatatcagatattaaactgataagaacagatactacacttgatcttagc 33988092  T

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Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 11872481 - 11872574
Alignment:
Q  8 aaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatag-caaaaggc 100  Q
    |||||||||||||||||||||||||  ||||  ||||||||||| |||||||| ||| || |||| ||| ||||||||||| ||| ||||||||    
T  11872481 aaaaaagtaatttaatatcgtgtgacccattgaaccacatatcatatattaaactgataagaacagatagtacacttgatcttagtcaaaaggc 11872574  T

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Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 28366191 - 28366284
Alignment:
Q  1 ccccctcaaaaaagtaatttaatatcgtgtgattcattagac-cacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    |||||| |||||||||||||||||||||||||  |||| |   |||||||||||||||||| ||| || |||| ||||||||||||||| ||||    
T  28366191 cccccttaaaaaagtaatttaatatcgtgtgacccattggggtcacatatcagatattaaactgataagaacagatactacacttgatcttagc 28366284  T

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Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 7448425 - 7448479
Alignment:
Q  6 tcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaa 60  Q
    |||||||||||||| |||||||| | ||||||| |||||||||||||||||||||    
T  7448425 tcaaaaaagtaattcaatatcgtataattcatttgaccacatatcagatattaaa 7448479  T

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Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 14676727 - 14676654
Alignment:
Q  20 taatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    |||||||||||||  |||| | ||||||||||||||||||| ||| || |||| ||||||||||||||| ||||    
T  14676727 taatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagc 14676654  T

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Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 93
Target Start/End: Original strand, 14667112 - 14667196
Alignment:
Q  9 aaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    |||||||||||||||||| |||||  |||| | |||| |||||||||||||| | | || |||| ||||||||||||||| ||||    
T  14667112 aaaaagtaatttaatatcatgtgaaccattggtccacgtatcagatattaaactaataagaacagatactacacttgatcttagc 14667196  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 37422244 - 37422191
Alignment:
Q  40 gaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    ||||||||||||||||||||| ||| || |||| || |||||||||||| ||||    
T  37422244 gaccacatatcagatattaaactgataagaacatatgctacacttgatcttagc 37422191  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 10791645 - 10791737
Alignment:
Q  1 ccccctcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    |||||||||||||||||||||||||| |||||  |||| || |||||||||||||||||| ||| || |||| ||||||||||||||| ||||    
T  10791645 ccccctcaaaaaagtaatttaatatcatgtgacccattggatcacatatcagatattaaactgataagaacagatactacacttgatcttagc 10791737  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 10795883 - 10795975
Alignment:
Q  1 ccccctcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    ||||||||||||||||||||||||||||||||  |||| |  |||||||||||||||||| ||| || |||| ||||||||||||||| ||||    
T  10795883 ccccctcaaaaaagtaatttaatatcgtgtgacccattgggtcacatatcagatattaaactgataagaacagatactacacttgatcttagc 10795975  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 11333344 - 11333285
Alignment:
Q  1 ccccctcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaa 60  Q
    ||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||    
T  11333344 ccccctcaaaaaagtaatttaatatcgtgtgatccgttggaccacatatcagatattaaa 11333285  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 3 - 93
Target Start/End: Complemental strand, 8875803 - 8875711
Alignment:
Q  3 ccctcaaaaaagta--atttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatcatagc 93  Q
    ||||||||||||||  |||||||||||||| ||  ||| ||||||||||||||||||||||||| || |||| ||| ||||||||||| ||||    
T  8875803 ccctcaaaaaagtataatttaatatcgtgtaatctattggaccacatatcagatattaaattgataagaacagatattacacttgatcttagc 8875711  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 13136664 - 13136609
Alignment:
Q  5 ctcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaa 60  Q
    |||||||||||||||||||||||||||   |||| | |||||||||||||||||||    
T  13136664 ctcaaaaaagtaatttaatatcgtgtggaccattggtccacatatcagatattaaa 13136609  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 30521356 - 30521269
Alignment:
Q  1 ccccctcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaattgacaaaaacaaatactacacttgatc 88  Q
    |||||||||||||  |||| ||||||||||||  |  | | ||||||||||||||||||| ||| || |||| |||||||||||||||    
T  30521356 ccccctcaaaaaataaattgaatatcgtgtgaggcgatggtccacatatcagatattaaactgataagaacagatactacacttgatc 30521269  T

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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 27134625 - 27134566
Alignment:
Q  1 ccccctcaaaaaagtaatttaatatcgtgtgattcattagaccacatatcagatattaaa 60  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  27134625 ccccctcaaaaaagtaatttaatatcgtttgactcattagaccacatatcagatattaaa 27134566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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