View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16817_high_30 (Length: 388)
Name: NF16817_high_30
Description: NF16817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16817_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 37705915 - 37705532
Alignment:
| Q |
1 |
cattgataataggtgcaaatatatacagctagtttacaatacaaattggtcaaaattaatgacgcctagtaatgctaataataacaaataatgtacaatt |
100 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37705915 |
cattgataataggtgcaaatatatacaactagtttacgatacaaattggtcaaaattaatgacgcctagtaatgctaataataacaaataatgtacaatt |
37705816 |
T |
|
| Q |
101 |
atattgctagagtaattctaggaaggcatataactgaagatcagcacctataatgatatggatcgttgactatatacagctggagattagtgtgaattta |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37705815 |
atattgctagagtaattttaggaaggcatataactgaagatcgacacctataatgatatggatcgttgactatatacagctggagattagtgtgaattta |
37705716 |
T |
|
| Q |
201 |
atgcgcctatacgcccccgcaagatggaggagggatcaacgactccaatcttggaagtaaggaactcatgttgtcttcgagaaagtggcttggtgagaag |
300 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37705715 |
atgcgcctatacgcccccgcaagatgaaggagggatcaacgactccaatcttggaagtaaggaactcatgttgtcttcgagaaagtggcttggtgagaag |
37705616 |
T |
|
| Q |
301 |
atctgcaagttggtgactagagggaacatgagagacttgaagttcgtttttagcaacaagatcgcgaacaaaatgatagtctat |
384 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
37705615 |
atctgcaagttggtgactagagtgaacatgagagacttgaagttcatttttagcaacatgatcgcgaacaaaatgatagtctat |
37705532 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 9144400 - 9144189
Alignment:
| Q |
1 |
cattgataataggtgcaaatatatacagctagtttacaatacaaattggtcaaaattaatgacgcctagtaatgctaataataacaaataatgtacaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
9144400 |
cattgataataggtgcaaatatatacagctagtttacaatacaaattggtcaaaattaatgatgcctagtaatgctaataacaacaaataatgtacaatg |
9144301 |
T |
|
| Q |
101 |
atattgctagagtaattctaggaaggcatataactgaagatcagcacctataatgatatggatcgttgactatatacagctggagattagtgtgaattta |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
9144300 |
atattgctagagtaattttaggaaggcatataaccgaagatcagcacctataatgatatggatcgttgactatatacagctgcagattagtgtgaattta |
9144201 |
T |
|
| Q |
201 |
atgcgcctatac |
212 |
Q |
| |
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|||||||||||| |
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|
| T |
9144200 |
atgcgcctatac |
9144189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 214 - 381
Target Start/End: Original strand, 19730581 - 19730748
Alignment:
| Q |
214 |
cccccgcaagatggaggagggatcaacgactccaatcttggaagtaaggaactcatgttgtcttcgagaaagtggcttggtgagaagatctgcaagttgg |
313 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||| || || |||||||| || || ||||||||||| ||||| || || |||||||| |
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|
| T |
19730581 |
cccccgcaagatggaggagatttcaacgacgccaatcttggaggtgagaaactcatgcctactccgtgaaagtggcttcgtgagcaggtcagcaagttga |
19730680 |
T |
|
| Q |
314 |
tgactagagggaacatgagagacttgaagttcgtttttagcaacaagatcgcgaacaaaatgatagtc |
381 |
Q |
| |
|
||||||||||| |||||||||||||||||||| || || ||||||||||| || |||||||||||||| |
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| T |
19730681 |
tgactagaggggacatgagagacttgaagttccttctttgcaacaagatctcggacaaaatgatagtc |
19730748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 211
Target Start/End: Original strand, 45614742 - 45614944
Alignment:
| Q |
9 |
ataggtgcaaatatatacagctagtttacaatacaaattggtcaaaattaatgacgcctagtaatgctaataataacaaataatgtacaattatattgct |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
45614742 |
ataggtgcaaatatatacagctagtttacagtacaaattggtcaaaattaatgacgcctagtaatgctaataataacaaataatgtacaatgatattgct |
45614841 |
T |
|
| Q |
109 |
agagtaattctaggaaggcatataactgaagatcagcacctataatgatatggatcgttgactatatacagctggagattagtgtgaatttaatgcgcct |
208 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45614842 |
agagtaattttaggaaggcatataactgaacatcagcacctataatgatatggatcgttgactatatacagctggagattagtgtgaatttaatgcgcct |
45614941 |
T |
|
| Q |
209 |
ata |
211 |
Q |
| |
|
||| |
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|
| T |
45614942 |
ata |
45614944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 2607118 - 2607169
Alignment:
| Q |
204 |
cgcctatacgcccccgcaagatggaggagggatcaacgactccaatcttgga |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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|
| T |
2607118 |
cgcctatacgcccccgcaagatggaggaggattcaacgatgccaatcttgga |
2607169 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 25450593 - 25450544
Alignment:
| Q |
206 |
cctatacgcccccgcaagatggaggagggatcaacgactccaatcttgga |
255 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||||||||| |
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|
| T |
25450593 |
cctatacgcccccgcaagatggaggaggattcaacgacgccaatcttgga |
25450544 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 252
Target Start/End: Complemental strand, 9739764 - 9739719
Alignment:
| Q |
207 |
ctatacgcccccgcaagatggaggagggatcaacgactccaatctt |
252 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||||| |
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|
| T |
9739764 |
ctatacgaccccgcaagatggaggaggggtcaacgactccaatctt |
9739719 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 43643520 - 43643472
Alignment:
| Q |
65 |
cctagtaatgctaataataacaaataatgtacaattatattgctagagt |
113 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||| ||||||| |
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|
| T |
43643520 |
cctagtaatgctaataattacaaataatgtacaatgatatttctagagt |
43643472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 31925229 - 31925180
Alignment:
| Q |
206 |
cctatacgcccccgcaagatggaggagggatcaacgactccaatcttgga |
255 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||| ||||||||||| |
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|
| T |
31925229 |
cctatacgcccccgcaagatggaggaggattcaatgacgccaatcttgga |
31925180 |
T |
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